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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGAATTTCAAATCTCTGCCTTGTCAATGAACTTGATGACTCTCTGCTACTTGTTGCCTCTTGTAATGTTCCAACTCTTTCCAGAGCGTCTTTTGCAAgttagttattgattgagtatggctgttaaaagctcttacttgtggttctgaaatctcatgtaggcgatggatcag

Basic information

species Arabidopsis thaliana
transcript AT5G01770.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 18
------------------------------------AAAGGAATTTCAAATCTCTGCCTTGTCAATGAACTTGATGACTCTCTGCTACTTGTTGCCTCTTGTAATGTTCCAACTCTTTCCAGAGCGTC--TTTTGCAAgttagttattgattgagtatggctgttaaaagctcttacttgtggttctgaaatctcatgtaggcgatggatcag
                                    ||||||||||| || ||||||||||| ||||| ||||||||     |||| |||| ||| || |||| | |||       ||  | |   |   ||||       | ||||||   ||||||   |  ||  |||   | ||| || | | |                         
CTGCTTAACAGTTTTGATAATCATGATTTTCCCGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGATAGCTTGCTTCTTGCTGCTTCATgtacttttctctactgtttaatattattcattttattctcgaattattgtaagagtat--ttaatattagcgact-cttatgatgcag-------------------------

upper sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 18
------------------------------------AAAGGAATTTCAAATCTCTGCCTTGTCAATGAACTTGATGACTCTCTGCTACTTGTTGCCTCTTGTAATGTTC-CAACTCTTTCCAGAGCGTC-TTTTGCAAgttagttattgattgagtatggctgttaaaagctcttact-tgtggttctgaaatctcatgtaggcgatggatcag
                                    ||||||||||| || ||||||||||| ||||| ||||||||     |||| |||| ||| || |||| |  || | ||| |||        || ||||       | ||||||   || |||   |||||     ||||    ||  |                              
CTACTGAACAGTTTTGATAATCATGATTTTCCTGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGAGAGCTTGCTTCTTGCTGCTTCATgtacttctctctactgtttaatatttttcattttattctcaaattattgtcagaatattaatgttagggaatcttttgatgcag------------------------------

upper sequence: AT5G01770.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 18
------------------------------------AAAGGAATTTCAAATCTCTGCCTTGTCAATGAACTTGATGACTCTCTGCTACTTGTTGCCTCTTGTAATGTTC----CAACTCTTTCCAGAGCGTCT---TTTGCAAgttagttattgattgagtat--ggctgttaaaagctcttacttgtggttctgaaatctcatgtaggcgatggatcag
                                    ||||||||||| || ||||||||||| || || |||||||||    |||| ||||||||||| |||||| ||       | | |||  | |  |  |   |    | |||  |  ||| | || |    |  | || |    ||| | || |  ||     |  | ||||||            
CTTCTCAACAGCTTTGACAATCATAATTTTCCTGATAAAGGAATTTCTAAACTCTGCCTTGTGAACGAGCTTGATGACAGCTTGCTGCTTGTTGCCTCATgtaatttttgtgttgattgtttggataatgattggatggagatgtttttacttgttagaatgctagattttttatgaatctaagttttactttccctacattatgtag------------