Sequence
atgc intronic sequence ATGC exonic sequenceGTGACTGTTATGGACACTTTGAGCAGACTAAGCCATGACACAGATTCAGAAGTTGCAATGgtgagttatcttttcgccactcatggttgaggtagagtagttatttctttgacttgctatgcagcgttggactgatgtttcatctgattcctacag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G28470.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 20
GTGACTGTTATGGACACTTTGAGCAGACTAAGCCATGACACAGATTCAGAAGTTGCAATGgtgagttatcttttcgccactcatggttgaggtagagtagttatttctttgacttgctatgcagcgttggactgatgtttcatctgattcctacag
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GTCAATGTTATGGATACCTTAAGCAGACTTAGCCATGATACTGATTCAGAAGTAGCTATGgtaagatgt----tagtctct------ttactttgaacatttgggtctatattttatt-tgtagc--taaaacaat---ttatatgcttcag----
upper sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 20
GTGACTGTTATGGACACTTTGAGCAGACTAAGCCATGACACAGATTCAGAAGTTGCAATGgtgagttatcttttcgccactcatggttgaggtagagtagttatttctttgacttgctatgcagcgttggactgatgtttcatctgattcctacag
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GTCAATGTTATGGACACATTAAGCAGACTTAGCCATGACACAGATACAGAAGTAGCAATGgtatggtg--atagagctagcctttttgttctctgagtagttctatcaatatattggccta-aacgcagaaata----tttgtgggattc-tacag
upper sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: EFJ26022 (Selaginella moellendorffii), 5'ss of exon 19
GTGACTGTTATGGACACTTTGAGCAGACTAAGCCATGACACAGATTCAGAAGTTGCAATGgtgagttatcttttcgccactcatggttgaggtagagtagttatttctttgacttgctatgcagcgttggactgatgtttcatctgattcctacag
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---AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTCGCGATGgtatg--agctttacg--agttcttctccgaatgaaatcgttattgttctctcctgtttttcccag------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|47828942|gb|CK118626.1|CK118626EST: TGGACACTTTGAGCAGACTAAGCCATGACACAGATTCAGAAGTTGCAATG GCAGCAATTATCTCCCTTGGATTGATAGGCGCTGGAACCAACAATGCAAGG
genomic: TGGACACTTTGAGCAGACTAAGCCATGACACAGATTCAGAAGTTGCAATGgtgagttatc ... attcctacagGCAGCAATTATCTCCCTTGGATTGATAGGCGCTGGAACCAACAATGCAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGACTGTTATGGACACTTTGAGCAGACTAAGCCATGACACAGATTCAGAAGTTGCAATGgtgagttatcttttcgccactcatggttgaggtagagtagttatttctttgacttgctatgcagcgttggactgatgtttcatctgattcctacag
- - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - AGAAGT