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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAATCCGATTGCTGTCAATAGCAAGTACTGTAATGTGTTCACTGAGAATAAACGGACCATCGTAATTATATCAACAGCAGAGTTTGGAAAGgtatgtcatcttgtataagtcataaacatcttttttctcggtctgctgatgaaaatatttctcagttgcctcttgtgcttgatgctttgaactcaaattgaagcagtattttataaacgaaggtgtacaatgaaatctgatcttatcgcagaacttgatctcagcttaatatatgtaacag

Basic information

species Arabidopsis thaliana
transcript AT4G25970.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25970.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GRMZM2G133885_T02 (Zea mays), 5'ss of exon 3
GTTAATCCGATTGCTGTCAATAGCAAGTACTGTAATGTGTTCACTGAGAATAAACGGACCATCGTAATTATATCAACAGCAGAGTTTGGAAAGgtatgtcatcttgtataagtcataaacatcttttttctcggtc-tgctgatgaaaatatttctcagttgcctcttg--tgcttgatgctttgaactcaaattgaagcagtattttataaacgaaggtgtacaatgaaatctgatcttatcgcagaacttgatctcagcttaatatatgtaacag
|| ||||| || ||||| ||||||||||| || ||||| ||||||||||||||| |     |   ||| ||||||||  |||||||||||||||| ||   |  ||      || | |   |  | ||    | || ||  | | | ||| |||  || ||   | ||   |  ||||  ||   |      |||||                                                                                
GTGAATCCCATCGCTGTGAATAGCAAGTATTGCAATGTATTCACTGAGAATAAAAGAGTTGTATCAATGATATCAACTTCAGAGTTTGGAAAGgtttgcatttctgctcttttccttattgttatgttcaatgctcatgtagtttataatcttttcca-ttatttattaaatagttgagact---agtctggattga--------------------------------------------------------------------------------

upper sequence: AT4G25970.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA08G19310.2 (Glycine max), 5'ss of exon 17
GTTAATCCGATTGCTGTCAATAGCAAGTACTGTAATGTGTTCACTGAGAATAAACGGACCATCGTAATTATATCAACAGCAGAGTTTGGAAAGgtatgtcatcttgtataagtcataaacatcttttttctcggtctgctgatgaaaatatttctcagttgcctcttgtgcttgatgctt-tgaactcaaattgaagcagtattttataaacgaaggtgtacaatgaaatctgatctta-tcgcagaacttgatc--tcag---cttaatatatgtaacag
|| ||||| |||||||| |||||||||||||| ||||| ||||| ||||| ||  |     |   |||  | ||||| | ||| |||||||||||  |||||      ||| |  |     |  | |   | | |  | | ||||  ||||      | ||    || | |   | | || |||| |   ||   ||     | | ||  ||     | |||  | |  | || |  || | ||||| ||| ||    |||   ||||  || |    |||
GTCAATCCCATTGCTGTAAATAGCAAGTACTGCAATGTCTTCACGGAGAACAAGAGAGTTGTTTCAATAGTTTCAACTGTAGATTTTGGAAAGgttggtcattgcaattaatttct-----ttgtctgaattgttgagttcatgactatatcct---gctgaaatttataccataagtttgtgaattattatctgagttacctataatctactgcc-tctactttcatttttgcttatagttgcagacctttattgaccagtatcttataattttattcag

upper sequence: AT4G25970.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA15G05680.1 (Glycine max), 5'ss of exon 19
GTTAATCCGATTGCTGTCAATAGCAAGTACTGTAATGTGTTCACTGAGAATAAACGGACCATCGTAATTATATCAACAGCAGAGTTTGGAAAGgtatgtcatcttgtataagtcataaacatcttttttctcggtctgctgatgaaaatatttctcagt---tgcctcttgtgcttga--tgctttga---actcaaattgaagcagtattttataaacgaaggtgtacaatgaaatctgatcttatcgcagaacttgatctcagcttaatatatgtaacag
|| ||||| |||||||| ||||| |||||||||||||| ||||| ||||| ||  |    ||   ||  || ||||| | ||| |||||||||||  |||||    |  || | ||     |||   |||| |   |   ||  | |   |     | |   |||| | |||   |||  || | |||   ||  | | |  |     ||||||       || |||| |     ||      |||||  | || |||   ||||                 
GTGAATCCCATTGCTGTAAATAGTAAGTACTGTAATGTCTTCACGGAGAACAAGAGAGTTATTTCAAGAATTTCAACTGTAGATTTTGGAAAGgttagtcat----tgcaattaatttgtgtctgaattcttgagttcgggactatatcctgctgaaatttatgccacatgtttatgaaatgatatgagttacctataatttattgccatttta-gcttatagttgtagacatgtattaaccattatcttataatttggattcag-----------------

upper sequence: AT4G25970.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: Vv12s0055g00710.t01 (Vitis vinifera), 5'ss of exon 15
GTTAATCCGATTGCTGTCAATAGCAAGTACTGTAATGTGTTCACTGAGAATAAACGGACCATCGTAATTATATCAACAGCAGAGTTTGGAAAGgtatgtcatcttgtataagtcataaacatcttttttctcggtctgctgatgaaaatatttctcagttgcctcttgtgcttgatgctttgaactcaaattgaagcagtattttataaacgaaggtgtacaatgaaatctgatcttatcgcagaacttgatctcagcttaatatatgtaacag
|||||||| |||||||| ||||||||||| || ||||| ||||| ||||| || ||     |     |||| |||||| |||| ||||| ||||| ||| || |      | ||||     |  | || || | |   |          ||||||    |  |   ||| ||| |||     ||   ||   |   |||| |||| |   | |                                                             
GTTAATCCCATTGCTGTGAATAGCAAGTATTGCAATGTATTCACAGAGAACAAGCGAGTAGTATCTGTTATTTCAACATCAGATTTTGGGAAGgtctgtgatttc-----aatcatt----tgatgttgcttgattcac----------atttcttgaatttcatctgt-ctttatgtaacaaaaaaaacaagctccagttttttcttttcca-------------------------------------------------------------