1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CAAGGCGATTCATCTTGACCCAGTGCCATTTGACATGGAACGAGATCTTCTTACGCCGACCTTCAAAAAGAAAAGGCCTCAGTTGCTGAAATACTACCAGgtaatacaaacacttttgcgtattgaaacatttagaaatctactgacattaagtattaattaacatggtctcttcgtcatctgccag
species | Arabidopsis thaliana |
transcript | AT4G23850.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: AAAGGCCTCAGTTGCTGAAATACTACCAG AGTGTGATCGACGAAATGTACAAGACCATAAATGCAAAATTTGCTTCCAGAEST: gi|124829235|gb|EH913830.1|EH913830
genomic: AAAGGCCTCAGTTGCTGAAATACTACCAGgtaatacaaa ... catctgccagAGTGTGATCGACGAAATGTACAAGACCATAAATGCAAAATTTGCTTCCAGA
EST: TTACGCCGACCTTCAAAAAGAAAAGGCCTCAGTTGCTGAAATACTACCAG AGTGTGATCGACGAAATGTACAAGACCATAAEST: gi|116427901|gb|EG470493.1|EG470493
genomic: TTACGCCGACCTTCAAAAAGAAAAGGCCTCAGTTGCTGAAATACTACCAGgtaatacaaa ... catctgccagAGTGTGATCGACGAAATGTACAAGACCATAA
EST: TTACGCCGACCTTCAAAAAGAAAAGCCCTCAGTTGCTGAAATACTACCAG AGTGTGATCGACGAAATGTACAAGACCATAAATGCAAAATTTGCTTCCAGAEST: gi|116458240|gb|EG500832.1|EG500832
genomic: TTACGCCGACCTTCAAAAAGAAAAGGCCTCAGTTGCTGAAATACTACCAGgtaatacaaa ... catctgccagAGTGTGATCGACGAAATGTACAAGACCATAAATGCAAAATTTGCTTCCAGA
EST: TTACGCCGACCTTCAAAAAGAAAAGGCCTCAGTTGCTGAAATACTACCAG AGTGTGATCGACGAAATGTACAAGACCATAAATGCAAAATTTGCTTCCAGAEST: gi|125043029|gb|EL115298.1|EL115298
genomic: TTACGCCGACCTTCAAAAAGAAAAGGCCTCAGTTGCTGAAATACTACCAGgtaatacaaa ... catctgccagAGTGTGATCGACGAAATGTACAAGACCATAAATGCAAAATTTGCTTCCAGA
EST: AGTTGCTGAAATACTACCAG AGTGTGATCGACGAAATGTACAAGACCATAAATGCAAAATTTGCTTCCAGA
genomic: AGTTGCTGAAATACTACCAGgtaatacaaa ... catctgccagAGTGTGATCGACGAAATGTACAAGACCATAAATGCAAAATTTGCTTCCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGCGATTCATCTTGACCCAGTGCCATTTGACATGGAACGAGATCTTCTTACGCCGACCTTCAAAAAGAAAAGGCCTCAGTTGCTGAAATACTACCAGgtaatacaaacacttttgcgtattgaaacatttagaaatctactgacattaagtattaattaacatggtctcttcgtcatctgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA