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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATAACTACCAAGTAAAAACTTTCAAAGATCGGTTTAAGGAGATGTTTGGTACAGAGGCAGAAAAAGTGGTTGATATCAACACTGTTGATGGGTTCCAGgtcaatattctaccctctttctcacagttcaacatcaattgtgctcataaacaaattaaaatgcattagattctgcttttatactaatctaagaacttgaaccgtagaattgtacttacagtccaaagttttcatccatttctttttcgtttttttcctcatcttgatgaaaag

Basic information

species Arabidopsis thaliana
transcript AT4G15570.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G15570.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: PP1S180_118V6.1 (Physcomitrella patens), 5'ss of exon 17
GTATAACTACCAAGTAAAAACTTTCAAAGATCGGTTTAAGGAGATGTTTGGTACAGAGGCAGAAAAAGTGGTTGATATCAACACTGTTGATGGGTTCCAGgtcaatattctaccctctttctcacagttcaacatcaattgtgctcataaacaaattaaaatgcattagattctgcttttatactaatctaagaacttgaaccgtagaattgtacttacagtccaaagttttcatccatttctttttcgtttttttcctcatcttgatgaaaag
 || ||   |||||| |||    |     | || ||||  ||| |  |||| | |||  | |      | |||||||||||||||||||||||||| |||||    || |||||    | ||    |||   ||    |||       |   |   |   ||| ||||   |    |    || | |    |  |       | |                                                                     
ATACAAGCTCCAAGTCAAATTACTTCGCCAACGCTTTACTGAGGTCCTTGGAAAAGAAACTGCTCGTCTTGTTGATATCAACACTGTTGATGGGTTTCAGgt----atactaccgaagt-ctagatgttgcccaatttttgcaacacaatgtattgtggcatgtattaaggttcattccattagtgactagaataacactttcct---------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116422172|gb|EG464764.1|EG464764
EST:     GTACAGAGGCAGAAAAAGTGGTTGATATCAACACTGTTGATGGGTTCCAG                         GGAAGGGAGAAGGATGTTGCAATATTTTCATGCGTCAGAGCTAACGAAAAT
genomic: GTACAGAGGCAGAAAAAGTGGTTGATATCAACACTGTTGATGGGTTCCAGgtcaatattc ... tgatgaaaagGGAAGGGAGAAGGATGTTGCAATATTTTCATGCGTCAGAGCTAACGAAAAT