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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGCAAGGACATTTGCTTTCTTCTACACAATAGGATTGCACGTCCTTGTCTTCACTTGTCTCTACCGTATGTCTGCTTACAGTTATCTCAGgtaaaacaaacccaccaatttttgtttttgttacaagtccattatgtgattgattttatttaatttcttcttctttatttatggtttag

Basic information

species Arabidopsis thaliana
transcript AT3G18480.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G18480.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA07G09890.2 (Glycine max), 5'ss of exon 17
ATACGCAAGGACATTTGCTTTCTTCTACACAATAGGATTGCACGTCCTTGTCTTCACTTGTCTCTACCGTATGTCTGCTTACAGTTATCTCAGgtaaaacaaacccaccaatttttgtttttgttacaagtccattatgtgattgattttatttaatttcttcttctttatttatggtttag
 || ||  | || || || ||||| || || || ||||||||  || | |||||||| ||||||||||| |||||||||  ||||||||| |||||||| |   |     | |  | |   ||||| || | |  ||  ||   ||||| |   | | ||  | |  |  |||   |     
GTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAGgtaaaata--tctgatgactaatttcactgttataactactgtacatg---gatttcagccactctcacccttctcttttcctgcag--

upper sequence: AT3G18480.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA09G31920.2 (Glycine max), 5'ss of exon 10
ATACGCAAGGACATTTGCTTTCTTCTACACAATAGGATTGCACGTCCTTGTCTTCACTTGTCTCTACCGTATGTCTGCTTACAGTTATCTCAGgtaaaacaaacccaccaatttttgtttttgttacaagtccattatgtgattgattttatttaatttcttcttctttatttatggtttag
 || ||  | || || || ||||| || || || ||||||||  || | |||||||| ||||||||||| |||||||||  ||||||||| |||||||| |   |   | | |  | |   ||||| || | |  ||  ||   ||||| |   | | | | |   | | |||   |     
GTATGCCCGAACTTTCGCATTCTTTTATACCATTGGATTGCATATCTTGGTCTTCACCTGTCTCTACCGAATGTCTGCTCTCAGTTATCTTAGgtaaaata--tctgacgactaatttcactgttataactactgtacatg---gatttcagccactctttacccttctctttcctgcag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164182338|gb|ES006179.1|ES006179
EST:     GTCTCTACCGTATGTCTGCTTACAGTTATCTCAG                         CCATGGAGCAGAGGAGACTCTAATGACAGAAGCAACCACAAACCTTCCTCA
genomic: GTCTCTACCGTATGTCTGCTTACAGTTATCTCAGgtaaaacaaa ... tatggtttagCCATGGAGCAGAGGAGACTCTAATGACAGAAGCAACCACAAACCTTCCTCA