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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATGTTTGAAGGGATTCTTGTTGATATACCATTTGCAACGTTTTTCCTCAGCAAACTGAAACAAAAgtatgtaaatttaatttctacctcaatttcctgtcacttcattcgttttttaagcccgcatagactttttgaacatgttgtgaaacttctattgttctttggctag

Basic information

species Arabidopsis thaliana
transcript AT3G17205.2
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G17205.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA17G04180.1 (Glycine max), 5'ss of exon 18
GCTATGTTTGAAGGGATTCTTGTTGATATACCATTTGCAACGTTTTTCCTCAGCAAACTGAAACAAAAgtatgtaaatttaatttctacctcaatttcctgtcacttcattcgttttttaagcccgcatagactttttgaacatgttgtgaaacttctattgttctttggctag---
|||||||||||||||||||| ||||||||||||||||| || |||||| | |||||| |||||||||||||   | | | ||    |  ||   | | || | |  |  || ||   || |    | ||      ||| |  ||| |   || |||  ||| ||| |   |||    
GCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTTTTCTTGAGCAAATTGAAACAAAAgta---agactcaaggagtctcttgctctact-ttaggtagttggtccatttaaattgaattag---tttaataatgct-caaatcttggatt-ttcatgcactatctt

upper sequence: AT3G17205.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA07G36390.1 (Glycine max), 5'ss of exon 18
GCTATGTTTGAAGGGATTCTTGTTGATATACCATTTGCAACGTTTTTCCTCAGCAAACTGAAACAAAAgtatgtaaatttaatttctacctcaatttcctgtcacttcattcgttttttaagcccgcatagactttttgaacatgttgtgaaacttctattgttctttggctag
|||||||||||||||||||| ||||||||||||||||| || || ||| | |||||| |||||||||||||   | | | ||    |  ||   | | || | |  |  || ||   |  |    | ||    ||  ||  ||  |  || |  |||     || |||  ||  
GCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTCTTCTTGAGCAAATTGAAACAAAAgta---agactcaaggagtctcttgctctgct-ttaggtagttggtccatataaattgaattagtttaatgctcaaatcttggattttcatgcattatttttct--

upper sequence: AT3G17205.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: Vv05s0077g00470.t01 (Vitis vinifera), 5'ss of exon 19
GCTATGTTTGAAGGGATTCTTGTTGATATACCATTTGCAACGTTTTTCCTCAGCAAACTGAAACAAAAgtatgtaaatttaatttctacctcaatttcctgtca-cttcattcgttt-tttaagcccgcatagactttttgaacatgttgtgaaacttctattgttctttggctag
|| |||||||||||||||||||| ||||||||||||||||| || ||  | |||||| | ||||||||||| |       ||  | |  || | |    | | | ||| |||  ||  ||||  | | |     ||   | ||  |||| | |  | | |||  || |        
GCCATGTTTGAAGGGATTCTTGTGGATATACCATTTGCAACATTCTTTTTGAGCAAATTAAAACAAAAgtaaggcttccaaaggtttcactgactgcaatataaactttatttcttggtttattctctctctctctcacttaat-tgtttttag-catttatcattgtga------