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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACATTCACAGTCTCCAACCTGGGGGGACCTTTTGGCATCAAACAGTTCTGTGCCGTCATCAATCCACCTCAAGCAGCCATTCTAGCAATCGGATCTGgtaagtccttagcatactcatccactttatccgttgaagtttcttccgcgtaacttattatagtgttggtgtctgaatctcaaaacag

Basic information

species Arabidopsis thaliana
transcript AT3G13930.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13930.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: PP1S78_56V6.1 (Physcomitrella patens), 5'ss of exon 15
GGAACATTCACAGTCTCCAACCTGGGGGGACCTTTTGGCATCAAACAGTTCTGTGCCGTCATCAATCCACCTCAAGCAGCCATTCTAGCAATCGGATCTGgtaagtccttagcatactcatccactttatccgttgaagtttcttccgcgt----aacttattatagtgttggtgtctgaatctca---aaacag-----
|||||||| ||| |||||||  |||| ||||||||||| || ||||| || |||||  |||||||||| ||||||||||||||||| ||  | ||  || ||||||| ||     |  |    | |   |    ||    |  ||  || |     |  | | |    ||    ||  || || ||   || |||     
GGAACATTTACAATCTCCAATTTGGGAGGACCTTTTGGGATTAAACAATTTTGTGCTATCATCAATCCTCCTCAAGCAGCCATTCTTGCTGTTGGGACTAgtaagtctttttttaatcccctgattagtttttgtgttactctttgagctttcaggatctttcaggacgtgcaggtaagagtcacattcaagcaggttta