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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAGgtattacctctgaactaattgttggttgctaaacaactcgatgttcaagttgctgaatatccctctactcaaatttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G11130.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 18
CATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAGgtattacctctgaactaattgttggttgctaaacaact--cgatgttcaagttgctgaatatccctctactcaaatttgcag
|||||| |||| ||||| |||||||| ||||| || ||||| || ||||| |||||||||||||| |    ||| || | ||  || |||||    | | |     ||     | || |  || |  | | | |  | |   |||
CATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAGgtttgttatcttaagttatgctttgttgcctgtctattattactggctggggtggtctat-ttacaccatt--attgaacag

upper sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 18
CATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAGgtattacctctgaactaattgttggttgctaaacaactcgatgttcaagttgctgaatatccctctactcaaatttgcag---
|||||| |||| ||||| |||||||| ||||| || ||||| || ||||| |||||||||||||| |    ||| || | ||  || |||||    | | |  || | |  | ||  |    ||| | ||| | | | |  |    
CATTACACAGAATTACCAGATATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAGgtttgttatcttaagttatgctttgttgcctgtctatt--at-tactggctggggtg-gtccatttacaccattattgaacag

upper sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 16
CATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAGgtattacctctgaactaattgttggttgctaaacaactcgatgttcaagttgctgaatatccctctactcaaatttgcag
||||| |||||||| ||||||||||| ||||| ||||| || || ||||| |||||||| ||||| |    | |  | | ||  |       |  |    | | | |     ||  | |  |   |  | | ||         
CATTATTCAGAGTTGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtgttcagttatgttcttgaaatgtatctgttgttttcttgtttattaacaacttccttgcacag--------

upper sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 6
CATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAGgtattacctctgaactaattgttggttgctaaacaactcgatgttcaagttgctgaata--tccctctactcaaatttgcag---------------------
|||||||||||||| ||||||||||| ||||  ||||| || || ||||  ||||| |||||||| |  |  ||  | | ||| || | |          |  |||||        | || |  ||| |  ||  | | |||  |                     
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttatttttagatatc---tttttttatgttttgcccattaaaaacttccttggacagacacttgttgagttctttggaacattgtcga

upper sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 5
CATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAGgtattacctctgaactaattgttggttgctaaacaactcgatgttcaagttgctgaatatccctctactcaaatttgcag
|||||||||||||| ||||||||||| ||||  ||||| || || ||||  ||||| |||||||| |  |  ||  | | ||| |  | |          |  |||||        | |  |   |  |   ||         
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttattttcagatatcttttt-tttaatgttttgcccattaacaacttccttggacag--------

upper sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 17
CATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAGgtattacctctgaactaatt--gttggttgctaaacaactcgatgttcaagttgctgaatatcc---ctctactcaaat-ttgcag
|||||| ||||||| || ||||| |||||||||||||| || |||||||| |||||||||||||| |      |  | |  ||   |   ||    |      |    | | ||||    ||||      |  |  ||   | ||||||
CATTACACAGAGTTGCCAGATATAAAACGTGTAATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgttccattgcttttataatttatctattgtaacatcatgctagttttaaaatacttagtcattgttcggttcttgcag

upper sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 17
CATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAGgtattacctctgaactaatt--gttggttgctaaacaactcgatgttcaagttgctgaatatcc---ctctactcaaat-ttgcag
|||||| ||||||| || ||||| |||||||| ||||| || |||||||| |||||||||||||| |      |  | |  ||   |   ||    |      |  | | | ||||  | |||       |  |  |||| | ||||||
CATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgatccattgcttttataatttatctattgtaacattatgctagtttttaaattcttagtcattgttcaattcttgcag

upper sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 18
CATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAGgtatt-acctctgaactaattgttggttgctaaacaactcgatgttcaagttgctgaatatccctctactcaaatttgcag
|||||  | ||||| || ||||| ||||| || |||||||| |||||||| |||||||||||||| || |    | ||||   ||||  ||| |  || |   | |  | || |||||    |   |     ||   | | |||
CATTATACTGAGTTGCCAGATATAAAACGCGTCATTGTGAATACACATGCAATTGAGCCACAGgtttttatacttcaactg--tgtttcttggttcactaggaggttgtaaacttgctattgaatacgtggttc---tcttcag