1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GGAATTCTCAATAACTAGCATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGgtacgctatatgtatagttagagattcctccagttttgagatcaaacattatatggaagtagagactaatgttgtctgtaaattgctgcag
species | Arabidopsis thaliana |
transcript | AT3G04820.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: ACGTGTTTTCCAGAAACCAATAGACTTTGAATG GGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCTEST: gi|116457909|gb|EG500501.1|EG500501
genomic: ACGTGTTTTCCAGAAACCAATAGACTTTGAATGgtacgctata ... attgctgcagGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCT
EST: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATG GGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCTEST: gi|116457913|gb|EG500505.1|EG500505
genomic: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGgtacgctata ... attgctgcagGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCT
EST: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATG GGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCTEST: gi|116462939|gb|EG505531.1|EG505531
genomic: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGgtacgctata ... attgctgcagGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCT
EST: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATG GGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCTEST: gi|116457908|gb|EG500500.1|EG500500
genomic: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGgtacgctata ... attgctgcagGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCT
EST: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATG GGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCTEST: gi|116457917|gb|EG500509.1|EG500509
genomic: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGgtacgctata ... attgctgcagGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCT
EST: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATG GGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGGGACGGATCTEST: gi|116457902|gb|EG500494.1|EG500494
genomic: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGgtacgctata ... attgctgcagGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCT
EST: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATG GGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATTTEST: gi|116457914|gb|EG500506.1|EG500506
genomic: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGgtacgctata ... attgctgcagGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCT
EST: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATG GGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCTEST: gi|116457920|gb|EG500512.1|EG500512
genomic: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGgtacgctata ... attgctgcagGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCT
EST: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATG GGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCTEST: gi|116457916|gb|EG500508.1|EG500508
genomic: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGgtacgctata ... attgctgcagGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCT
EST: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATG GGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGGGACGGATCTEST: gi|116457919|gb|EG500511.1|EG500511
genomic: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGgtacgctata ... attgctgcagGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCT
EST: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATG GGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCTEST: gi|125140581|gb|EL178773.1|EL178773
genomic: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGgtacgctata ... attgctgcagGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCT
EST: TTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATG GGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGAEST: gi|116457911|gb|EG500503.1|EG500503
genomic: TTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGgtacgctata ... attgctgcagGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGA
EST: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATG GGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCT
genomic: ATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGgtacgctata ... attgctgcagGGAATTACTGACTTACACTGACAGCAATAAACCATTGGCAGAGACGGATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATTCTCAATAACTAGCATGACTGGTGGTTATAGACGTGTTTTCCAGAAACCAATAGACTTTGAATGgtacgctatatgtatagttagagattcctccagttttgagatcaaacattatatggaagtagagactaatgttgtctgtaaattgctgcag
- - - - - - - - - - - - TGGTGG