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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACTGTAATGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAAGTTGCCATGgttagcaatcatttcgcttcatagcctgtcccatattatttagctgaatagtattgagagaggactgatctttcttttgactcgtacag

Basic information

species Arabidopsis thaliana
transcript AT2G20580.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20580.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: EFJ14427 (Selaginella moellendorffii), 5'ss of exon 19
GTGACTGTAATGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAAGTTGCCATGgttagcaatcatttcgcttcatagcctgtcccatattatttagctgaatagtattgagagaggactgatctttcttttgactcgtacag
 | | ||| |||||||| |||||| |||| ||||||||||| || |||||||| || |||||     || |    |||| |     | | |            | ||||   || |       | || ||| || | |   ||  |   
ATTAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACTGACTCGGAAGTCGCGATGgt-----atga----gctttacgagttcttct-----------ccgaatgaaatcg-----ttattgttctctcctgtttttcccag--

upper sequence: AT2G20580.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: EFJ26022 (Selaginella moellendorffii), 5'ss of exon 19
GTGACTGTAATGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAAGTTGCCATGgttagcaatcatttcgcttcatagcctgtcccatattatttagctgaatagtattgagagaggactgatctttcttttgactcgtacag
   | ||| |||||||| |||||| |||| |||||||||||||| |||||||| || |||||     || |    |||| |     | | |            | ||||   || |       | || ||| || | |   ||  |   
---AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTCGCGATGgt-----atga----gctttacgagttcttct-----------ccgaatgaaatcg-----ttattgttctctcctgtttttcccag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86050680|gb|DR346435.1|DR346435
EST:     TGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAAGTTGCCATG                         TCAGCAATTATATCATTGGGACTGA
genomic: TGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAAGTTGCCATGgttagcaatc ... actcgtacagTCAGCAATTATATCATTGGGACTGA
EST: gi|164051982|gb|ES204782.1|ES204782
EST:     TGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAAGTTGCCATG                         TCAGCAATTATATCA
genomic: TGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAAGTTGCCATGgttagcaatc ... actcgtacagTCAGCAATTATATCA
EST: gi|116466338|gb|EG508930.1|EG508930
EST:     CCTTGAGCCGGCTTAGCCATGACACAGATTCGGAAGTTGCCATG                         TCAGCAATTATATCATTGGGACTGATTGGCGCTGGAACTAATAACGCAAGG
genomic: CCTTGAGCCGGCTTAGCCATGACACAGATTCGGAAGTTGCCATGgttagcaatc ... actcgtacagTCAGCAATTATATCATTGGGACTGATTGGCGCTGGAACTAATAACGCAAGG
EST: gi|125290286|gb|EL304371.1|EL304371
EST:     TGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAAGTTGCCATG                         TCAGCAATTATATCATTGGGACTGATTGGCGCTGGAACTAA
genomic: TGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAAGTTGCCATGgttagcaatc ... actcgtacagTCAGCAATTATATCATTGGGACTGATTGGCGCTGGAACTAA
EST: gi|86050679|gb|DR346434.1|DR346434
EST:     TGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAAGTTGCCATG                         TCAGCAATTATATCATTGGGACTGATTGGCGCTGGAACTAATAACGCAAGG
genomic: TGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAAGTTGCCATGgttagcaatc ... actcgtacagTCAGCAATTATATCATTGGGACTGATTGGCGCTGGAACTAATAACGCAAGG