Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCCAGGTGACTGCGTTACAACTTATAATTGGAACTCTGCAGAGGATGCAAGTATTTGGTGTTGAGAATAGAGATACATTAACGCACAAGGCTACGGGGgtatttcatcatgatatgataattagtctcttaccatattcaattgtctctgcttaaaggctgacaagggaaaacttatactcttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G17790.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17790.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA11G08390.1 (Glycine max), 5'ss of exon 18
GGCCCAGGTGACTGCGTTACAACTTATAATTGGAACTCTGCAGAGGATGCAAGTATTTGGTGTTGAGAATAGAGATACATTAACGCACAAGGCTACGGGGgtatttcatcatgatatgataattagtctcttaccatattcaattgtctctgcttaaaggctgacaagggaaaacttatactcttgcag
 || ||| | || ||  | ||  | ||||| || ||||| || |||||||| || ||||||||||| || || ||||| ||||| |||||||| || |||||| ||  | |  || | || |||    |  | |   ||  |  | | ||| ||  ||  || |     |     |   | |    |||
AGCACAGATCACAGCTATCCATTTAATAATAGGGACTCTTCAAAGGATGCACGTCTTTGGTGTTGAAAACAGGGATACTTTAACCCACAAGGCCACAGGGgtaattattga--atttcatcatttacgtagtgctcaatatatatttttctact-gaatcctcatttttgtgctttctcattgg-acag

upper sequence: AT2G17790.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 18
GGCCCAGGTGACTGCGTTACAACTTATAATTGGAACTCTGCAGAGGATGCAAGTATTTGGTGTTGAGAATAGAGATACATTAACGCACAAGGCTACGGGGgtatttcatcatgatatgataattagtctcttaccatattca-attgtctctgcttaaaggctgacaagggaaaacttatactcttgcag
 || ||| | || ||  | ||  | ||||| || ||||| || |||||||| || ||||||||||| || || ||||| ||||| |||||||| || |||||| ||  | |  || |  | |||    |  | |   ||  |  || | ||| ||   |  |              || |  |    |||
AGCACAGATCACAGCTATCCATTTAATAATAGGGACTCTTCAAAGGATGCACGTCTTTGGTGTTGAAAACAGGGATACTTTAACTCACAAGGCCACAGGGgtaattattga--atttcgttattgaaatagtgctcaatatatgttttttctact--gattcctcttttttgtgctttctcattggacag

upper sequence: AT2G17790.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: Vv04s0023g03870.t01 (Vitis vinifera), 5'ss of exon 19
GGCCCAGGTGACTGCGTTACAACTTATAATTGGAACTCTGCAGAGGATGCAAGTATTTGGTGTTGAGAATAGAGATACATTAACGCACAAGGCTACGGGGgtatttcatcatgatatgataattagtctcttaccatattcaat-tgtctctgcttaaaggctgacaagggaaaacttatactctt-gcag
 || |||||||||||  |||| || ||| | || ||||| ||||||||||| || |||||||||||||| || ||||| ||||| |||||||| || |||||| |   |  |   ||   |  |  |     | |   ||||   |||||||||| |||  ||||   |   || ||| || | |  ||||
AGCACAGGTGACTGCTCTACACCTAATAGTAGGGACTCTTCAGAGGATGCATGTCTTTGGTGTTGAGAACAGGGATACCTTAACACACAAGGCCACAGGGgtaatat-tagtagaattgcatctctttataaaaccagttcagcctgtctctgctgaaaccctgatttg---aagcttttattttgagcag