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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACATCCATTTCTCAGgtatgggctacttgtcaaggtcttaagaatatctataaggtcttgatacagttgaacgaatgaaactatccttaatgatcctactctgtgaaattatagt...

Basic information

species Arabidopsis thaliana
transcript AT2G16950.2
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G16950.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GRMZM2G376731_T01 (Zea mays), 5'ss of exon 18
TGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACATCCATTTCTCAGgtatgggctacttgtcaaggtcttaagaatatctataaggt--cttgatacagttgaacgaatgaaactatccttaatgatcctactctgtgaaattatagt-----
 || ||  | ||||| ||  || |  | |||||||| |||||||| ||||| || ||||||||||||||| | || || ||||||||||| ||| | ||||||  |  |  || | ||  | |  | |  ||||||    |  ||  ||| |  | | |    ||||  |||  || |||  |   |  | | |    | |      
AGATATATTTATGCCGCCTTTGATCACGAAGTGGCAGCAACTTTCCAATTCTGACAAAGATCTATTTCCACTCCTTGAATGCTTTACATCTATTGCACAGgtactg--tggtt-ttaatctgtggaaatcatctatgttttttctgaatataccttatctg--gaaatcatc--tattgaaacagtttggagtaggagttgctttta

upper sequence: AT2G16950.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 18
TGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACATCCATTTCTCAGgtatgggctact----tgtcaaggtcttaagaatatctataaggtcttgatacagttgaacgaatgaaactatccttaatgatcctactctgtgaaattatagt---------------------------------------------
||| ||||| ||||| ||| |  |||  || ||||| ||||||||||||||||| |||||||| |||||| | || || ||||||||||| || || || |||||  |  ||    |  |||  | |||        |||| ||     ||      ||||||   | |  ||    |||  |  ||     || || | ||                                               
TGACATTCTCATGCCACCATTAATTGAGAAATGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCACTCCTGGAATGCTTTACATCTATATCACATgtatgcacatctgtttttccaacatattacatgataatatatgggtggaatttgtgggaacgatctatataatttgaaatttttgtatggactgtaactgtatcatcatatctattttcttgtttctgatggtgttccattttatacag

upper sequence: AT2G16950.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 18
TGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACATCCATTTCTCAGgtatggg---ctacttgtcaa---ggtctta----agaatatctataaggtcttgatacagt----tgaacgaatgaaactatccttaatgatcctactctgtgaaattatagt-------------------------------------
||| ||||| ||||| ||| |  |||  |||||||| ||||||||||||||||| |||||||| |||||  | || || ||||||||||| ||  | || ||| ||    ||  || || |   |    ||    |  ||||  ||    | | |   || |    |  |  | |  || | |   ||  ||   ||  |||| | || |||                                       
TGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACATCTATAGCACATgtacggatatctgtttttccaacagactatatgttaatatatgcatggaatttgggggcaatgatctatataatttgaaatttttgtatggactgtaa-ctgt-acatcatatctattttcttgctcctgatggtgttccatttgatacag

upper sequence: AT2G16950.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: Vv18s0001g00910.t01 (Vitis vinifera), 5'ss of exon 18
TGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACATCCATTTCTCAGgtatgggctacttgtcaaggtcttaagaatatctataaggtcttgatacagttgaacgaatgaaactatccttaatgatcctac-tctgtgaaattatagt----
||| ||||||||||||||| |  ||||||||||||| | | |||| |||||||| ||||| || |||||| ||||||||||||||||||| ||  | ||||||||   ||||| |          | | ||| | ||    |||  |   ||| |||  |  | |  |||    |||||  ||  |   |  ||||   |     
TGATATTCTGATGCCTCCATTAATTGCAAAGTGGCAGCTAGTTTCCAATTCAGACAAAGACCTCTTTCCACTGCTAGAGTGCTTTACATCTATAGCACAGgtatgctgtactttttgttaataggacagtat-tgta----cttagtcttgtttaacacactatataatctgatatgatattatattctttcaattgaggaaaaa

upper sequence: AT2G16950.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 18
TGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACATCCATTTCTCAGgtatgggctac----ttgtcaaggtcttaagaatatctataaggtcttgatacagttgaacgaatgaaactatccttaatgatcctactctgtgaaattatagt
||| ||||| ||||| ||| || | ||||||||||| |||||||| ||||||||||||||  | || ||| |||| |||||||||||||| ||  | |||||||   | ||    || |   |  ||||||    | | | |  | ||  | ||    |     |  |  ||   |  |   |  ||  || |||   |     
TGATATTCTAATGCCGCCATTGATCGCAAAGTGGCAGCAACTTTCTAATTCAGATAAAGACATTTTCCCACTGCTGGAGTGCTTTACATCTATAGCACAGgtatttacgacagtcttcttttgaccttaagc---tatgttatttgtttgttcaaggaactttgtctacataatatataaattggtatactatgatcatgcca-