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AAAAAGAATAGCAGCTGCGGTGATTAAGGAAGCGATTGAGGAGGATTTGGTTGAAGGATATAGAGAAATGGACGCTCGAGAGATCCAAAAGCTGGATGAGgtaacaattcagctaatgacttgctttaatataatcataaatgatagaaaaagaaaagatgtcaaaacaacatcccatctttcacgtgttttggactcct...
species | Arabidopsis thaliana |
transcript | AT2G13560.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: AAGGATATAGAGAAATGGACGCTCGAGAGATCCAAAAGCTGGATGAG GAGGGGCTGATGGAGTATGTGGAAAACAACATGTGGAATCCAGTAGTACCCEST: gi|164096680|gb|ES033367.1|ES033367
genomic: AAGGATATAGAGAAATGGACGCTCGAGAGATCCAAAAGCTGGATGAGgtaacaattc ... tattccgcagGAGGGGCTGATGGAGTATGTGGAAAACAACATGTGGAATCCAG-AGTACCC
EST: TTGAAGGATATAGAGAAATGGACGCTCGAGAGATCCAAAAGCTGGATGAG GAGGGGCTGATGGAGTATGTGGAAAACAACATGTGGAATCEST: gi|116453720|gb|EG496312.1|EG496312
genomic: TTGAAGGATATAGAGAAATGGACGCTCGAGAGATCCAAAAGCTGGATGAGgtaacaattc ... tattccgcagGAGGGGCTGATGGAGTATGTGGAAAACAACATGTGGAATC
EST: TTGAAGGATATAGAGAAATGGACGCTCGAGAGATCCAAAAGCTGGATGAG GAGGGGCTGATGGAGTATGTGGAAAACAACATGTGGAATCCAGAGEST: gi|125191343|gb|EL206297.1|EL206297
genomic: TTGAAGGATATAGAGAAATGGACGCTCGAGAGATCCAAAAGCTGGATGAGgtaacaattc ... tattccgcagGAGGGGCTGATGGAGTATGTGGAAAACAACATGTGGAATCCAGAG
EST: AGATCCAAAAGCTGGATGAG GAGGGGCTGATGGAGTATGTGGAAAACAACATGTGGAATCCAGAGTACCCGEST: gi|124889294|gb|EH968196.1|EH968196
genomic: AGATCCAAAAGCTGGATGAGgtaacaattc ... tattccgcagGAGGGGCTGATGGAGTATGTGGAAAACAACATGTGGAATCCAGAGTACCCG
EST: AAATGGACGCTCGAGAGATCCAAAAGCTGGATGAG GAGGGGCTGATGGAGTATGTGGAAAACAACATGTGGAATCCAGAGTACCCG
genomic: AAATGGACGCTCGAGAGATCCAAAAGCTGGATGAGgtaacaattc ... tattccgcagGAGGGGCTGATGGAGTATGTGGAAAACAACATGTGGAATCCAGAGTACCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAAGAATAGCAGCTGCGGTGATTAAGGAAGCGATTGAGGAGGATTTGGTTGAAGGATATAGAGAAATGGACGCTCGAGAGATCCAAAAGCTGGATGAGgtaacaattcagctaatgacttgctttaatataatcataaatgatagaaaaagaaaagatgtcaaaacaacatcccatctttcacgtgttttggactcct
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctttcac