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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTATATATTCACAAACAGTGTCCAAAGATCTTGGCGTGTATTTGAAGCACTTGAATATGGACTTGTAGGGGTGAACGAAGGACTCATATCAACAGAGgtaagaccagggatgaaagaaccacgttctcctaattatagccatacatatgcttacatcttttgattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G79440.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79440.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: LOC_Os02g07760.1 (Oryza sativa), 5'ss of exon 18
TGCTTATATATTCACAAACAGTGTCCAAAGATCTTGGCGTGTATTTGAAGCACTTGAATATGGACTTGTAGGGGTGAACGAAGGACTCATATCAACAGAGgtaaga-------------ccagg-gatgaaag------aaccacgttctcctaattata-gccatacatatgc-----ttacatcttttgattgcag
||| ||||| |||||||| ||  | |   | || ||||| || |  ||||| |||||||||||||| || || |||||||| ||  |||| |||||||||||||||             ||||   |  ||||      |||  | ||||||| ||  |   |  || | ||||     | || | ||||   | |||
TGCATATATCTTCACAAAGAGCATACCTCGTTCATGGCGCGTTTCGGAAGCTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAGgtaagaagcaagcaccgtcccagataacaaaagctaagcaactccattctccttatggtccactttataaatgctgttctaacttgttttttcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482451|gb|EG525043.1|EG525043
EST:     CACTTGAATATGGACTTGTAGGGGTGAACGAAGGACTCATATCAACAGAG                         GTGGCTCCATTCGGGGGAGTGAAGCAGTCTGGTCTTGGAAGGGAAGGATCC
genomic: CACTTGAATATGGACTTGTAGGGGTGAACGAAGGACTCATATCAACAGAGgtaagaccag ... ttgattgcagGTGGCTCCATTCGGGGGAGTGAAGCAGTCTGGTCTTGGAAGGGAAGGATCC