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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGAGAGTGTAGAAGCTGCAATTGTGAGGCTCCAGGAAGAAGTTAAGAATTGCAAAAACATCCTCAAATGTGGTGTATGTTTTGATCGGCCTAAAGAGgtaacaatgctcataacaatcctatatctcactgtcaaggcagacataatgattcgataatcctttctcatcactgtcataatcatcatcaatagtcatatatcatgcatcagaaaatatcattttcagcgcatatcaacaaccgctttttgtttcaaacattatttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G55250.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55250.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GRMZM2G341271_T02 (Zea mays), 5'ss of exon 19
TTCTGAGAGTGTAGAAGCTGCAATTGTGAGGCTCCAGGAAGAAGTTAAGAATTGCAAAAACATCCTCAAATGTGGTGTATGTTTTGATCGGCCTAAAGAGgtaacaatgctcataacaatcctatatctcactgtcaaggcagacataatgattcgataatcctttctcatcactgtcataatcatcatcaatagtcatatatcatgcatcagaaaatatcattttcagcgcatatcaacaaccgcttt-ttgtttcaaacatt-atttgcag
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CTCTGAGACTGAAGAGACTACTGTCCGGAAACTTGAGGATGAAATAAAAGAATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAGgtaaca-----tataatg-tactgtacgtgtttctcaa--------tcatgattttagagg---tttacaccattcttagctccaccacgaa-gttcctgtttctt-tgttggatgatcaattttgccgcctaaactgacgaggattgtatttttctgtatattcgttgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077017|gb|DR372774.1|DR372774
EST:     ATTGCAAAAACATCCTCAAATGTGGTGTATGTTTTGATCGGCCTAAAGAG                         GTGGTAATTGTGAAATGTTATCATCTGTTCTGCCAGCAATGCATCCAACGT
genomic: ATTGCAAAAACATCCTCAAATGTGGTGTATGTTTTGATCGGCCTAAAGAGgtaacaatgc ... ttatttgcagGTGGTAATTGTGAAATGTTATCATCTGTTCTGCCAGCAATGCATCCAACGT
EST: gi|164111546|gb|ES048811.1|ES048811
EST:     AAACATCCTCAAATGTGGTGTATGTTTTGATCGGCCTAAAGAG                         GTGGTAATTGTGAAAT
genomic: AAACATCCTCAAATGTGGTGTATGTTTTGATCGGCCTAAAGAGgtaacaatgc ... ttatttgcagGTGGTAATTGTGAAAT