Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTCTAAGTGAAGAGAGAATTCTAGCACAAAACCCACCTCTTCAACCAGGAACTCCAGCCATTTCAATTAAGAATGGATACTTTTCATGGGATTCAAAGgtgaatcctcaaaatatttcctcttgtttacattatgttggaatgcaatattagcttctgcaatgctaagtatacatgacattctgatcacagtgtttgctcgaatatttcccag

Basic information

species Arabidopsis thaliana
transcript AT1G30410.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: LOC_Os04g52900.2 (Oryza sativa), 5'ss of exon 16
ACTTCTAAGTGAAGAGAGAATTCTAGCACAAAACCCACCTCTTCAACCAGGAACTCCAGCCATTTCAATTAAGAATGGATACTTTTCATGGGATTCAAAGgtgaatcctcaaaatatttcctcttgtttacattatgttggaatgcaatattagcttctgcaatgctaagtatacatgacattctgatcaca-gtgtttgctcgaatatttcccag
 ||  |   |||||||||| | ||    |  || ||||||||| | || |    |||||| ||||| |||||||||||||| ||||||||||| ||  |||| | | |     || ||||   |  ||| | |  | |   |||  |         |||    ||   |  | ||||   | ||| ||||    |   |  |  |||||  | || 
CCTCTTGGCTGAAGAGAGATTACTTCTGCCCAATCCACCTCTTGATCCTGAGCTTCCAGCAATTTCTATTAAGAATGGATATTTTTCATGGGAATCGCAGgtaatttc-----atgtttcagat-atttgcctggtatctaaatata---------tctatgttgactatcacacattcaactctcatcattcattgatattataatataacaca-

upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 18
ACTTCTAAGTGAAGAGAGAATTCTAGCACAAAACCCACCTCTTCAACCAGGAACTCCAGCCATTTCAATTAAGAATGGATACTTTTCATGGGATTCAAAGgtgaatc--ctcaaaatatttcctcttgtttacatta-tgttggaatgcaatattagcttctgcaat-gctaagtatacatgacattctgatcacagtgtttgctcgaatatttcccag
  |  ||  ||| ||| ||| | ||  |||||| |||||| || ||||||||  ||||||||| |||||| |||||||||||||||||||||||   |||||||||      |  ||  |||   |       | || | ||  || |   | |||  ||    |||    | | | | ||       || | ||| | |  ||               
GTTCTTAGCTGAGGAGCGAAATTTAAAACAAAATCCACCTATTGAACCAGGACTTCCAGCCATCTCAATTGAGAATGGATACTTTTCATGGGATCGTAAGgtgaatttgtctatgatccttctgttcacagttactagttttttaaagttgtgttaattttcaaaattaacaggcacagata------tgtttacaatataagcca-------------

upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: Vv10s0003g04450.t01 (Vitis vinifera), 5'ss of exon 5
---ACTTCTAAGTGAAGAGAGAATTCTAGCACAAAACCCACCTCTTCAACCAGGAACTCCAGCCATTTCAATTAAGAATGGATACTTTTCATGGGATTCAAAGgtgaatcctcaaaat-atttcctcttgtttacattatgttggaatgcaatattagcttctgcaatgctaagtatacatgacattctgatcacagtgtttgctcgaatatttcccag
    ||||||| ||||||| ||||||| | || ||| |||||| || |||||||   |||||| || ||||| ||| ||||||||||||| |||||   || |   |||  |||   |  |||| | || | |  | || |||  | |    | ||  ||| |  || |  |  |     |   |||    ||||| | ||  | | | |         
ACTGCTTCTAACTGAAGAGCGAATTCTTGTACCAAATCCACCTTTTGAACCAGGGCTTCCAGCTATCTCAATCAAGGATGGATACTTTTCTTGGGAA--AAGgtcaaattttcatgtttgtttctttttttatgaaatacgttttact----ttttgactttt--aaggtcagctccttgtag-atttgtctcaca-tcttaacaccatt---------

upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: Vv10s0003g04470.t01 (Vitis vinifera), 5'ss of exon 17
ACTTCTAAGTGAAGAGAGAATTCTAGCACAAAACCCACCTCTTCAACCAGGAACTCCAGCCATTTCAATTAAGAATGGATACTTTTCATGGGATTCAAAGgtgaatcctcaaaatatttcctcttgtttacattatgttggaatgcaatattagcttctgcaatgctaagtatacatgacattctgatcacagtgtttgctcgaatatttcccag
  |  ||| |||||||||| |||| |||| ||| ||| ||||| ||||||||  ||||||||| ||||| ||| ||||||||||||| ||||||||||||||  |   |  | || | |    || |||   |  | |       |    ||  ||| |  | | | ||  | |  | |  |  || |     |||||  | |  | ||| |   
GTTCTTAACTGAAGAGAGAGTTCTTGCACCAAATCCAACTCTTGAACCAGGACTTCCAGCCATCTCAATCAAGGATGGATACTTTTCTTGGGATTCAAAGgtctaattttcatatttatttatttctttttttccttt-------cttctttttcttttttattacgaaacacatcttaggtggtgtt-----tgtttttttggctttttgc---