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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATTGTATTTGGCATCATGTCCCGCAAGATTCATTAGGCCTGTTAAAAATATATCTATACCTTCTGATAATATTGAACTGATTGGACCATTTGAACAGgtagcaaatcctatcaatattatcttcatatccacctttcctggtatacaatcaaatgaaaagaaaaagattctaccaaaccag

Basic information

species Arabidopsis thaliana
transcript AT1G29940.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G29940.1 (Arabidopsis thaliana), 5'ss of exon 18
lower sequence: LOC_Os10g35290.1 (Oryza sativa), 5'ss of exon 16
TGGATTGTATTTGGCATCATGTCCCGCAAGATTCATTAGGCCTGTTAAAAATATATCTATACCTTCTGAT---------AATATTGAACTGATTGGACCATTTGAACAGgtagcaaatcctatcaatattatcttcatatccacctttcctggtatacaatcaaatgaaaagaaaaagattctaccaaaccag
          ||  || ||  ||| || |||||  || | || || | || | | |     |  ||  ||         |||||||| |||||||||||||||||||||||      |||  |   |||   ||||| ||   ||| |  | || ||  || | | ||  |  ||    |  | | | |  ||
--------CCTTTTCACCA-ATCCAGCTAGATTTCTTCGTCCGGTCAGAAGTCTCTTAGGTCTATCCAATGGAGGGCCAAATATTGAGCTGATTGGACCATTTGAACAGgt------tcccttt--tatccacttca-atggtcctatattagtttattattacaagatgactaatttttcattctacattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116447247|gb|EG489839.1|EG489839
EST:     ATATATCTATACCTTCTGATAATATTGAACTGATTGGACCATTTGAACAG                         GTTTTTATGGAAATAAGCTGTCCTGATGGTGGAAATGGAGGAAGGAATAAC
genomic: ATATATCTATACCTTCTGATAATATTGAACTGATTGGACCATTTGAACAGgtagcaaatc ... accaaaccagGTTTTTATGGAAATAAGCTGTCCTGATGGTGGAAATGGAGGAAGGAATAAC
EST: gi|116447248|gb|EG489840.1|EG489840
EST:     ATATATCTATACCTTCTGATAATATTGAACTGATTGGACCATTTGAACAG                         GTTTTTATGGAAATAAGCTGTCCTGATGGTGGAAATGGAGGAAGGAATAAC
genomic: ATATATCTATACCTTCTGATAATATTGAACTGATTGGACCATTTGAACAGgtagcaaatc ... accaaaccagGTTTTTATGGAAATAAGCTGTCCTGATGGTGGAAATGGAGGAAGGAATAAC