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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGAGGCAGAGATACTGAACGCACTCAAGGCACTAGCGAGTAACAGGACATCTATCTTCATTGCCCACAGGCTGACCACTGCGATGCAATGTGACGAGgtttgtagtaaatagtgtttgtcaacttagctcaaagaaacaatgtttttgcataactgaaacttttggttgcgggcag

Basic information

species Arabidopsis thaliana
transcript AT5G58270.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58270.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA02G40490.1 (Glycine max), 5'ss of exon 18
AACAGAGGCAGAGATACTGAACGCACTCAAGGCACTAGCGAGTAACAGGACATCTATCTTCATTGCCCACAGGCTGACCACTGCGATGCAATGTGACGAGgt---ttgtag-taaatagtgtttgtcaact--tagctcaaagaaacaatgtttttgcataactgaaacttttggttgcgggcag---------------
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AACAGAAGCAGAAATTTTAAGTGCGTTAAATTCAGTAGCAAATAATCGGACTTCCATATTCATTGCTCACAGGCTTACCACTGCAATGCAGTGTGACGAGgtaaattatatctatctagttttatgtagttcctagttttatgtatacctgttataataaattttatgtaagtttacatagatagctccagaacacagtt