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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTTGGAGCATTACAAAGGAAAATGGCCCTTCTGGATTAGTCCGCGACAGGCCATAGTTTGTCCTATATCAGAGAAATCTCAGCAATATGCAGAAAAGgttacttttgtggctgttgctgtactcttttactgagcacatgtggttcttatcgacttatttgcagtgtctaatctctggtttttcttttgacacaacag

Basic information

species Arabidopsis thaliana
transcript AT5G26830.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G26830.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv19s0015g00470.t01 (Vitis vinifera), 5'ss of exon 17
ATTGTTGGAGCATTACAAAGGAAAATGGCCCTTCTGGATTAGTCCGCGACAGGCCATAGTTTGTCCTATATCAGAGAAATCTCAGCAATATGCAGAAAAGgttactt-ttgtggctgttgctgtactcttttactgagcacatgtggttcttatcgacttattt-gcagtgtctaatctctggtttttctt-ttgacacaacag
| | |||||||| ||||| || ||||||||||||||| ||||||| || || || || ||||| ||| | |||||||||||||||| |||||||    ||||   ||  | ||   |||  |      |  |  | |     | |  |  ||      |  |||  || | || | | ||| |   |  ||  |||  ||    
ACTTTTGGAGCACTACAAGGGGAAATGGCCCTTCTGGCTTAGTCCACGTCAAGCAATTGTTTGCCCTGTGTCAGAGAAATCTCAGCCATATGCACTTCAGgtagtttgctatgtacgtt--taacaattgctggttaatgtctataatattttatatttggtttcacactctcaactttctagaaatctttactgatgcata--

upper sequence: AT5G26830.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 17
ATTGTTGGAGCATTACAAAGGAAAATGGCCCTTCTGGATTAGTCCGCGACAGGCCATAGTTTGTCCTATATCAGAGAAATCTCAGCAATATGCAGAAAAGgttacttttgtggctgttgctgtactcttttactg-agcacatgtggttcttatcgacttatttgcagtgtctaatctct---ggtttttcttttgacacaacag
| | |||||||| ||||| || ||||||||||||||| ||||||| || ||||| || ||||| ||| | |||||||||||||||| |||||||   |||||   |||  ||  ||    | ||    |||   | |     | |  |  ||    | ||  ||||    ||||| || |   |   | | |  |||  |     
ACTTTTGGAGCACTACAAGGGGAAATGGCCCTTCTGGCTTAGTCCACGTCAGGCGATTGTTTGCCCTGTGTCAGAGAAATCTCAGCCATATGCACTTAAGgtagttttgctgtatgcaaatttagcaatttctggtaatgtctataatattttataatttgattgctcactctaaactttctggaaatctatgctgatgc-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125197611|gb|EL212565.1|EL212565
EST:     TATGCAGAAAAG                         GTTCAAAAGCAAATTAAAGATGCTGGGTTCTATGTTGATGCTGACTTAACA
genomic: TATGCAGAAAAGgttacttttg ... gacacaacagGTTCAAAAGCAAATTAAAGATGCTGGGTTCTATGTTGATGCTGACTTAACA
EST: gi|125120753|gb|EL168311.1|EL168311
EST:     AGCAATATGCAGAAAAAG                         GTTCAAAAGCAAATTAAAAGATGCTGGGTTCTATGTTGATGCTGACTTAA
genomic: AGCAATATGCAG-AAAAGgttacttttg ... gacacaacagGTTCAAAAGCAAATT-AAAGATGCTGGGTTCTATGTTGATGCTGACTTAA