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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAGTTTTGACATCTCAGTCACGTGATGGCCTACACGTCTTTGATGATTTTAGAGAGTCTTATGCATGGTTAAGCCATAATACTGATGTGGATGATAAAgtaagttttttcaacaaaaacaagtcagtttttagttcctgttaagcatcatcctttggtagaggtataagctgtctttaatatatgaagttgcctgagtttgatttgcaaaaataaaatcttggtag

Basic information

species Arabidopsis thaliana
transcript AT5G19690.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 17
AATAGTTTTGACATCTCAGTCACGTGATGGCCTACACGTCTTTGATGATTTTAGAGAGTCTTATGCATGGTTAAGCCATAATACTGATGTGGATGATAAAgtaagttttttcaacaaaaacaagtcagtttttagttcctgttaagcatcatcctttggtagaggtataagctgtctttaatatatgaagttg-cctgagtttgatttgcaaaaataaaatcttggtag
 || ||| | ||||| || |||| ||||||  | || || |||||||||||||||||| ||||||| ||| |||| |||||||| ||  | |||||||||||||||| |    |    |     | | ||||  |   |||  | ||||  |    ||      ||| ||  | | ||||  | |||  |    |||   ||   |||||                   
TATTGTTCTAACATCGCATTCACATGATGGAATTCATGTATTTGATGATTTTAGAGAGGCTTATGCGTGGCTAAGTCATAATACAGAAATAGATGATAAAgtaagttct----atgggattttattatttttcgg---ctgaaatgcat-gtatggtgtcttgtgtacaa--tttttttacca-atgttgccaaccttgattatctttgcc------------------

upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 17
AATAGTTTTGACATCTCAGTCACGTGATGGCCTACACGTCTTTGATGATTTTAGAGAGTCTTATGCATGGTTAAGCCATAATACTGATGTGGATGATAAAgtaagttttttcaacaaaaacaagtcagtttttagttcctgttaagcatcatcctttggtagaggtataagctgtctttaatatatgaagttgcctgagtttgatttgcaaaaataaaatcttggtag
 || ||| | ||||| || |||| |||||| || || || ||||| |||||||||||| ||||||| ||| | || |||||||| ||  | |||||||||||||||| | |          |  ||| | |||   | |||  | ||||| |    ||     || | ||     ||||  ||   || ||||||  | |||||||  |                   
TATTGTTCTAACATCACATTCACATGATGGACTTCATGTTTTTGACGATTTTAGAGAGGCTTATGCTTGGCTGAGTCATAATACAGAAATAGATGATAAAgtaagttctatggg-------atttcattatttctctgctgaaatgcatc-tgtggtgtcttgggcacaa-----cttttttac-cgatgttgcc-aactttgattatcttcgcc-------------

upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 17
AATAGTTTTGACATCTCAGTCACGTGATGGCCTACACGTCTTTGATGATTTTAGAGAGTCTTATGCATGGTTAAGCCATAATACTGATGTGGATGATAAAgtaagttttttcaacaaaaacaagtcagtttttagttcctgttaagcatcatcctttggtagaggtataagctgtctttaatatatgaagttgcctgagtttgatttgcaaaaataaaatcttggtag
 || ||||| |||||||| || | ||||||||| ||||| |||||||||||||||||| |||||||||||||| | || |||||||| |||||||||||||| |||||  || |     |    || ||| || |||    ||           |||  |   ||||| |   || |  ||    || |||||| |   ||||||                       
TATTGTTTTAACATCTCATTCTCATGATGGCCTTCACGTTTTTGATGATTTTAGAGAGGCTTATGCATGGTTACGACACAATACTGAGGTGGATGATAAAgtgagtttcctccatgtttatctctctgttgtttgtttgattttcctgaacctttttcttcatggtatca-tggtttggaac---tgcagttgcat---tttgatcg---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164187883|gb|ES027799.1|ES027799
EST:     TTAGAGAGTCTTATGCATGGTTAAGCCATAATACTGATGTGGATGATAAA                         GTGGCATCATGGTGGGACTATGG
genomic: TTAGAGAGTCTTATGCATGGTTAAGCCATAATACTGATGTGGATGATAAAgtaagttttt ... atcttggtagGTGGCATCATGGTGGGACTATGG