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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAGAAGAAGAATCCAGGTCTTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctgttacattattcaaaagacagtgagaaatgtggtttatcaactctgcttttacag

Basic information

species Arabidopsis thaliana
transcript AT5G13940.1
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116480284|gb|EG522876.1|EG522876
EST:     TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTG                         GTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
genomic: TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctg ... gcttttacagGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
EST: gi|116481915|gb|EG524507.1|EG524507
EST:     TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTG                         GTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
genomic: TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctg ... gcttttacagGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
EST: gi|116481924|gb|EG524516.1|EG524516
EST:     TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTG                         GTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
genomic: TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctg ... gcttttacagGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
EST: gi|116480243|gb|EG522835.1|EG522835
EST:     TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTG                         GTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
genomic: TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctg ... gcttttacagGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
EST: gi|116481923|gb|EG524515.1|EG524515
EST:     TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTG                         GTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
genomic: TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctg ... gcttttacagGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
EST: gi|116480191|gb|EG522783.1|EG522783
EST:     TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTG                         GTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
genomic: TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctg ... gcttttacagGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
EST: gi|116481912|gb|EG524504.1|EG524504
EST:     TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTG                         GTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
genomic: TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctg ... gcttttacagGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
EST: gi|116481910|gb|EG524502.1|EG524502
EST:     TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTG                         GTCACAGTGGTAAGTTCTGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
genomic: TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctg ... gcttttacagGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
EST: gi|116480267|gb|EG522859.1|EG522859
EST:     TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTG                         GTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
genomic: TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctg ... gcttttacagGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
EST: gi|116481918|gb|EG524510.1|EG524510
EST:     TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTG                         GTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
genomic: TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctg ... gcttttacagGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
EST: gi|116481916|gb|EG524508.1|EG524508
EST:     TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTG                         GTCACAGTGGTAAGTTCTGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
genomic: TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctg ... gcttttacagGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
EST: gi|116480218|gb|EG522810.1|EG522810
EST:     TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTG                         GTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
genomic: TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctg ... gcttttacagGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
EST: gi|116481922|gb|EG524514.1|EG524514
EST:     TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTG                         GTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
genomic: TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctg ... gcttttacagGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
EST: gi|116480168|gb|EG522760.1|EG522760
EST:     TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTG                         GTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT
genomic: TTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctg ... gcttttacagGTCACAGTGGTAAGTTCAGTGAGCCTCAAAAAAGCTGATATCAGAGTCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAGAGAAGAAGAATCCAGGTCTTACGCCACTGGACTGGGTCAAGTTTCTTGTCTCTGCTGCCATTGGACTGgtcagttctgttacattattcaaaagacagtgagaaatgtggtttatcaactctgcttttacag

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