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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAGGTTTCCAATGCCCATATTGTTTGGTGGTGATGGCAGTTACATGGCTCCTTTCTCACTTCAAAATGACAACATTCTTACCAGTCTGATGAGTCAGgttggttccttagttaacgagaagcagtttcagcagttaaatgaaaggttgtatcgattctttctcattgttttactttctcag

Basic information

species Arabidopsis thaliana
transcript AT5G11700.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G11700.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GRMZM2G412234_T01 (Zea mays), 5'ss of exon 7
CCAAAGGTTTCCAATGCCCATATTGTTTGGTGGTGATGGCAGTTACATGGCTCCTTTCTCACTTCAAAATGACAACATTCTTACCAGTCTGATGAGTCAGgttggttccttagttaacgagaagcagtttcagcagttaaatgaaaggttgtatcgattctttctcattgttttactttctcag
 ||||||||||||||| || |  | ||||| |||||||| |||||||||||||| || |||||| | | |||||   | ||||| ||||| ||||| |||||    || ||  ||||       ||  || | | ||| |      |    ||   | | |||||||                 
TCAAAGGTTTCCAATGTCCCTGATCTTTGGAGGTGATGGAAGTTACATGGCTCCGTTTTCACTTAATAGTGACAGTGTGCTTACTAGTCTTATGAGCCAGgta---tcgtt--ttaagatctttcaaattgaactgttcat-----gtccttac--actttttctcag----------------

upper sequence: AT5G11700.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA06G09360.1 (Glycine max), 5'ss of exon 17
CCAAAGGTTTCCAATGCCCATATTGTTTGGTGGTGATGGCAGTTACATGGCTCCTTTCTCACTTCAAAATGACAACATTCTTACCAGTCTGATGAGTCAGgttg-gttccttagttaacgagaagcagtttcagcagttaaatgaaaggttgtatcgattctttctcattgttttactttctcag-------------------------------------
  ||||||| |||||| |  |    ||||| |||||||| ||||| |||||||| ||| | ||||| ||||| || || |||||||| || ||||||||||||  |||  |   ||   | |||     ||        | ||| |   | |        ||| ||  |||||  | | |    |                                     
TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAATGATAATATCCTTACCAGCCTCATGAGTCAGgttttgtttatcgattttggggaacttaattttatgcacagatgcactttagacatatgccttactttttgttccattcttatggaatttaattatatgcatacttttaatgttatttgcag

upper sequence: AT5G11700.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA04G09230.1 (Glycine max), 5'ss of exon 17
CCAAAGGTTTCCAATGCCCATATTGTTTGGTGGTGATGGCAGTTACATGGCTCCTTTCTCACTTCAAAATGACAACATTCTTACCAGTCTGATGAGTCAGgttggttccttagttaacgagaagcagtttcagcagttaaatgaaaggttgtatcgattctttctcattgttttactttctcag------------------------------------
  ||||||| |||||| |  |    ||||| |||||||| ||||| |||||||| ||| | ||||| || || || || |||||||| || |||||||||||| |||  |   ||     |||     ||        | ||| |       | ||   ||| ||  |||||  | |||                                         
TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAACGATAATATCCTTACCAGCCTCATGAGTCAGgtttgtttatcgattttgaggaactcaattttatgcacagatgcacttagaca-cgtgccttactttttgttccaattttctgaatttaattatatgcatacttttaatgttgtttgcag