Sequence
atgc intronic sequence ATGC exonic sequenceTTTTGAACTGCATTCAATGCCATCCGTTTGATAGTGTTGTAGCAACGAGTGGAATTGATAACACAATAAAGgtaagcaggcacacaaagctgtcttcagggtttggttttcatttcgtgtaagatctctaaaactaacatttgcatgtaaaaatatgtgtacag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G10940.2 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G10940.2 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA04G09890.2 (Glycine max), 5'ss of exon 17
TTTTGAACTGCATTCAATGCCATCCGTTTGATAGTGTTGTAGCAACGAGTGGAATTGATAACACAATAAAGgtaagcaggcacacaaagctgtcttcagggtttggttttcatttcgtgtaagatctctaaaactaacatttgcatgtaaaaatatgtgtacag
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TTGTAAATTGTGTTCAATGCCATCCATTTGATTTTGTTGTTGCAACCAGTGGGATTGATAGCACAATAAAGgtgagtatgatgactctatgatgtgtagtatct----tttgaattgaataaaaacttcaatctctgaagctttctggtggtgtattattctag
upper sequence: AT5G10940.2 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA06G09930.1 (Glycine max), 5'ss of exon 16
TTTTGAACTGCATTCAATGCCATCCGTTTGATAGTGTTGTAGCAACGAGTGGAATTGATAACACAATAAAGgtaagcaggcacacaaagctgtcttcagggtttggttttcatttcgtgtaagatctctaaaactaacatttgcatgtaaaaatatgtgtacag
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TTGTAAATTGTGTACAATGCCATCCATTTGATTTTGTTGTTGCAACCAGTGGGATTGATAGCACAATAAAGgtgggtatgatgactctatgatgtgtagtatct----tttgaattgaataaaaacttcaatctctgaagctttctggtggtgcattattctag
upper sequence: AT5G10940.2 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv18s0001g07170.t01 (Vitis vinifera), 5'ss of exon 15
TTTTGAACTGCATTCAATGCCATCCGTTTGATAGTGTTGTAGCAACGAGTGGAATTGATAACACAATAAAGgtaagcaggcacacaaagctgtcttcagggtttggttttcatttcgtgtaagatctctaaaactaacatttgcatgtaaaaatatgtgtacag
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TCGTGAACTGTGTGCAGTGTCATCCATTTGATTGTACTGTAGCCACCAGTGGGATTGATAACACAATAAAGgtgagt-gatgaaaataacttatttgaatgtacgagtcaggttaaagagttgacttctgaaa--aatgcatggttctag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124913778|gb|EH987652.1|EH987652EST: ATCCGTTTGATAGTGTTGTAGCAACGGGTGGAATTGATAACACAATAAAG ATATGGAGCCCAACCGCATCAGTCCCATCAATTGTAGCAGGAGGA
genomic: ATCCGTTTGATAGTGTTGTAGCAACGAGTGGAATTGATAACACAATAAAGgtaagcaggc ... atgtgtacagATATGGAGCCCAACCGCATCAGTCCCATCAATTGTAGCAGGAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTGAACTGCATTCAATGCCATCCGTTTGATAGTGTTGTAGCAACGAGTGGAATTGATAACACAATAAAGgtaagcaggcacacaaagctgtcttcagggtttggttttcatttcgtgtaagatctctaaaactaacatttgcatgtaaaaatatgtgtacag
- - - - - - - - - - - - - - - - - - - - - - - AGTGGA