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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGAAATAAGTAAACAAAGGCTTGATCGTGCCATTCTTACCTTCTTCCAAAATTTCCGGAAGTCTTACGTTGGTGATCAGGCCATGCATTCATCAAAAgtaaatgcaaaccctgtttcttttttttattgtatttgttctatgtatatttctgatactacctttctgttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G06120.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G06120.2 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: LOC_Os03g42050.1 (Oryza sativa), 5'ss of exon 15
TGGTGAAATAAGTAAACAAAGGCTTGATCGTGCCATTCTTACCTTCTTCCAAAATTTCCGGAAGTCTTACGTTGGTGATCAGGCCATGCATTCATCAAAAgtaaatgcaaaccctgtttcttttttttattgtatttgttctatgtatatttctgatactacctttctgttgcag-------------------------------
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TCAAGTATTAAGTAAGCAAAGACTTGATCGTGCTATTCTTATCTTTGTGCAAAATTTCAGAAGGTCATATGTAGGAGATCAAGCCATGCATTCTTCAAAGgttagaagaaaccgaataatagaacataacaattataattttcttttttttcttgatg-taccttttt-ttgtaaatccccatcaagttttacttctttgctgcag

upper sequence: AT5G06120.2 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 17
TGGTGAAATAAGTAAACAAAGGCTTGATCGTGCCATTCTTACCTTCTTCCAAAATTTCCGGAAGTCTTACGTTGGTGATCAGGCCATGCATTCATCAAAAgtaaatgcaaaccctgtttcttttttttattgtatttgttctatgtatatttctgatactac--ctttctgttgcag
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TCGTGAAATAAGCAAGCAAAGACTCGATCGTGCCATTCTCACATTCTTTCAGCATTTTCGAAAGTCTTATGTAGGGGATCAGGCCATGCATTCTTCCAAGgtaa-tgaagtttctgtttttcttttccagaaagtgtagtttaaatattcccttgaagctctttctttatgttgcag