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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATCCGTTCTTTGGAGCGCGTACTACAGTATGGAGAGCAGAACATTCGACGTGCAGTGCCTTTGGCTCTTGGTCTCCTATGTATATCAAACCCAAAGgtgagtattatttttgcatatctagttttcggcggcgtgcagttacttttctgcttaagaatactgttgttactctctaacttttttataattccag

Basic information

species Arabidopsis thaliana
transcript AT4G28470.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 19
GGAGATCCGTTCTTTGGAGCGCGTACTACAGTATGGAGAGCAGAACATTCGACGTGCAGTGCCTTTGGCTCTTGGTCTCCTATGTATATCAAACCCAAAGgtga----gtattatttttgcatatctagttttcggcggc-gtgcagttacttttctgcttaaga-atactgttgttactctctaacttttttataattccag--------------------------------------------------
||  || || || || || |   | ||||| |||||||||||||| ||||| || ||||| |||||||| |||||||| || ||||||||||| |||||||| |    |  ||  ||      || |   |  |   ||| ||||  | | |   | |  | | | | | |    || ||||  ||   |   ||| ||  ||                                                  
GGCAATTCGATCATTAGAACATCTTCTACAATATGGAGAGCAGAATATTCGCCGAGCAGTTCCTTTGGCCCTTGGTCTACTCTGTATATCAAATCCAAAGgtaaaatggacttgcttccctgcatttttatcactttggcagtgctatcattgaacagtgtgaaacacattacc-ttgctcttaaaagatgacatagttgtagggctgcaagatgccactaacttttgctaacttttctctgaataattacag

upper sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 19
GGAGATCCGTTCTTTGGAGCGCGTACTACAGTATGGAGAGCAGAACATTCGACGTGCAGTGCCTTTGGCTCTTGGTCTCCTATGTATATCAAACCCAAAGgtga----gtattatttttgcatatctagttttcggcggcgtgcagttacttttctgcttaaga-atactgttgttactctctaac--ttttttataattccag--------------------------------------------------------
|| ||| || || || || |   | ||||| |||||||||||||| ||||| || ||||| |||||||| |||||||| || ||||||||||| |||||||| |    |  ||  ||      || |  |       |  |||   ||| |   | |  | | | | | |    || ||||  ||   |   ||||| ||  ||                                                        
GGCGATTCGATCATTAGAACATCTTCTACAATATGGAGAGCAGAATATTCGCCGAGCAGTTCCTTTGGCACTTGGTCTACTCTGTATATCAAATCCAAAGgtaaaatggacttgcttccctgcatttcatgacttttgcagtgttattattgaacagtgtgaaacacattacc-ttgctctgaaaagatgacttatagttgtagggctgcaactgcaagatgtcaccaacttttgctaactttttactaaatcattctag

upper sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 19
GGAGATCCGTTCTTTGGAGCGCGTACTACAGTATGGAGAGCAGAACATTCGACGTGCAGTGCCTTTGGCTCTTGGTCTCCTATGTATATCAAACCCAAAGgtgagtattatttttgcatatctagttttcggcggcgtgcagttacttttctgcttaagaatactgttgttactctctaacttttttataattccag--------
||  || ||||| || ||||   | || ||||||||||||||||| || || || ||||| || ||||| ||||||||||| || ||||||||||| |||||   || |  |||  ||| | | | ||  | |    ||     | | |   || |  | | ||| |    | |||  ||  |   |  || ||           
GGCAATTCGTTCCTTAGAGCATCTTCTTCAGTATGGAGAGCAGAATATCCGCCGAGCAGTCCCATTGGCCCTTGGTCTCCTCTGCATATCAAACCCTAAGgtacctaatgctttaacatctttgggttgggtccatttgtg--cagtgtaaagcctgtgcacacttta---attcttaaaggtgagttgaagtctgtattaaaga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828942|gb|CK118626.1|CK118626
EST:     GACGTGCAGTGCCTTTGGCTCTTGGTCTCCTATGTATATCAAACCCAAAG                         GTGACTGTTATGGACACTTTGAGCAGACTAAGCCATGACACAGATTCAGAA
genomic: GACGTGCAGTGCCTTTGGCTCTTGGTCTCCTATGTATATCAAACCCAAAGgtgagtatta ... ataattccagGTGACTGTTATGGACACTTTGAGCAGACTAAGCCATGACACAGATTCAGAA