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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTGCTCCATATTGAGCTGCTCGTTTACAGACGACAAAAATGTCTATTATTGTGTTGGTACAGCATATGTTTTGCCCGAGGAAAATGAACCAACTAAGgtatcatttcagtgagactcactactgtttattttgtttgtgtgaaaatttatcttttcatttttatattgtttcgtggatgtag

Basic information

species Arabidopsis thaliana
transcript AT4G21100.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: LOC_Os05g51480.1 (Oryza sativa), 5'ss of exon 17
TGGTTGCTCCATATTGAGCTGCTCGTTTACAGACGACAAAAATGTCTATTATTGTGTTGGTACAGCATATGTTTTGCCCGAGGAAAATGAACCAACTAAGgtatcatttcagtgagactcactactgtttattt-tgtttg-tgtgaaaatttatcttttcatttttatattgtttcgtggatgtag-------------
||| ||||||||  | |||||||| ||  |||| || || ||||| ||||||||||| || |||||||||||||| || ||||||||||||||| | ||||||  || |  |  ||  | |    |  |||    |||| | | | |  | |  | ||||||  |  | |  |||   |   |||               
TGGCTGCTCCATCATTAGCTGCTCATTCTCAGATGATAATAATGTTTATTATTGTGTGGGAACAGCATATGTTTTACCAGAGGAAAATGAACCATCAAAGgtaatatgtttggtagcttgatgttttcttacaggtgttcgatctcattaatagtattttcaaataaaaaaagttgtatttttgtttgaaaaataggaag

upper sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GRMZM2G430027_T01 (Zea mays), 5'ss of exon 5
TGGTTGCTCCATATTGAGCTGCTCGTTTACAGACGACAAAAATGTCTATTATTGTGTTGGTACAGCATATGTTTTGCCCGAGGAAAATGAACCAACTAAGgtatcatttcagtga----gactcactactgtt--tattttgtttgtgtgaaaatttatcttttcatttttatattgtttc-gtggatgtag----------------------------------------------------------
||| ||||||||  | ||||| ||||||   || ||||| ||||||||||| ||||| || || ||||||||| | || || |||||||||||||| |||||   || || |  |    ||     ||||  |  || ||   | || |  ||  |  |  ||  ||||  |  ||||||  ||  || |                                                            
TGGCTGCTCCATCATTAGCTGTTCGTTTGTGGATGACAATAATGTCTATTACTGTGTGGGAACTGCATATGTTATACCTGAAGAAAATGAACCAACCAAGgtgatatatctgaaatcatgatcttttactaatgctagttaactcgtttttaa--tacttgttcaatttacagcttgttttagttaatttctcagtgagccttttctatttctcgtgcacaaaatggttatgtatcggtacatcttgtag

upper sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 17
TGGTTGCTCCATATTGAGCTGCTCGTTTACAGACGACAAAAATGTCTATTATTGTGTTGGTACAGCATATGTTTTGCCCGAGGAAAATGAACCAACTAAGgtatcatttcagtgagactcactactgtttattttgtttgtgtgaaaattt--atcttttcatttttata-ttgtttcgtgg-atgtag
|||||||| |||| | |||||||| ||  |||| ||||| ||||| ||||| |||||||| || ||||||||  |||| ||||||||||||||||| || |||  | |   | || | |      | |     || ||   || ||  ||   || |  |  ||  |||     |||      ||||||
TGGTTGCTTCATAATTAGCTGCTCCTTCTCAGATGACAATAATGTGTATTACTGTGTTGGAACTGCATATGTACTGCCAGAGGAAAATGAACCAACCAAAgta--agt---gagaaatttgtatttttcagcattattctagtcaagcttctgatatcctgcttcctatggccattttaaaacatgtag

upper sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 17
TGGTTGCTCCATATTGAGCTGCTCGTTTACAGACGACAAAAATGTCTATTATTGTGTTGGTACAGCATATGTTTTGCCCGAGGAAAATGAACCAACTAAGgtatcatttcagtgagactcactactgtttattttgtttgtgtgaaaatttatcttttcatttttatattg-----tttcgtggatgtag
|||||||| |||| | |||||||| ||  |||| ||||| ||||| ||||| |||||||| || ||||||||  |||| ||||||||||||||||| || |||  | || ||  |     | |  | |     |||||   || |||  || |  | || |  ||   |||     |||     ||||||
TGGTTGCTTCATAATTAGCTGCTCCTTCTCAGATGACAATAATGTGTATTACTGTGTTGGAACTGCATATGTACTGCCAGAGGAAAATGAACCAACCAAAgta--agttgagaaatttgtattttt-tcagcattgttctagtcaaagcttctgatatcctgcttcctttggccattttaaaacatgtag

upper sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA12G08330.1 (Glycine max), 5'ss of exon 5
TGGTTGCTCCATATTGAGCTGCTCGTTTACAGACGACAAAAATGTCTATTATTGTGTTGGTACAGCATATGTTTTGCCCGAGGAAAATGAACCAACTAAGgtatcatttcagtgagactcactactgtttattttgtttgtgtgaaaattt-----atcttttcatttttatattgtttcgtggatgtag
                                | ||||| ||||| ||||| |||||||| || ||||||||  |||| ||||||||||||||||| || |||  | || ||  |     | |  | |     |||||   || |||  ||     ||| |      |||    | |||     ||||||
--------------------------------ATGACAATAATGTGTATTACTGTGTTGGAACTGCATATGTACTGCCAGAGGAAAATGAACCAACCAAAgta--agttgagaaatttgtattttt-tcagcattgttctagtcaaagcttctgatatcctgcttcctttggcctttttaaaacatgtag

upper sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 17
TGGTTGCTCCATATTGAGCTGCTCGTTTACAGACGACAAAAATGTCTATTATTGTGTTGGTACAGCATATGTTTTGCCCGAGGAAAATGAACCAACTAAGgta-----tcatttcagtg---agactcactactgtttat-----tttgtttgtgtgaaaatttatcttttcatttttatattgtttcgtggatgtag--
||||||||| ||  | |||||||| ||  | || || |  ||||| |||||||| ||||| || ||||||||||| || ||||||||||| ||||| ||||||      ||| | |||    | |  ||   |||| |||     || ||||||    | | |     || || | | |  |  | ||      |  |  
TGGTTGCTCTATCCTTAGCTGCTCCTTCTCTGATGATAGTAATGTATATTATTGCGTTGGGACCGCATATGTTTTACCAGAGGAAAATGAGCCAACCAAGgtaaaatgccatattagtacatacatacatacctgtatatatgtattggtttgttgccagaatagcacttgcagtctaaattaatgtctgaatcgctgag