Sequence
atgc intronic sequence ATGC exonic sequenceGTACGGTACAAGCATGTTCGAGAGACTTCAAAAGGCTGGCTATCCAGTAAAAATGTTGAAGACCCAATACCGGATGCATCCAGAGgtacggacattctttcatctagcatccacctaagacagattctcactgaatatcagatttcttaaagaattatcatcagttgatacctatttcacaaaccaagccaaagattgtagttagcttaattcttactccaatgattgcatcttattttaccctgcaaacaatttttttaactgaaaatcag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G15570.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G15570.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA08G08230.1 (Glycine max), 5'ss of exon 18
GTACGGTACAAGCATGTTCGAGAGACTTCAAAAGGCTGGCTATCCAGTAAAAATGTTGAAGACCCAATACCGGATGCATCCAGAGgtacggacattctttcatctagcatccacctaagacag-attctcactgaatatcagatttcttaaagaattatcatcagttgatacctatttcacaaaccaagccaaagattgtagttagcttaattcttactccaatgattgcatcttattttaccctgcaaacaatttttttaactgaaaatcag
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ATATGGCACAAGCTTATTTGAAAGATTGAAGCAGGCTGGTTATCCAGTTAAAATGTTGAAGACTCAATACAGAATGCATCCTGAGgttggtgcatattgttaagatgt-tctatattggttaggaatatggctaaa----atactgtttagaaggct-----tgggctatccttcccccctgaattaggttttag------------------------------------------------------------------------------
upper sequence: AT4G15570.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv19s0015g00460.t01 (Vitis vinifera), 5'ss of exon 16
GTACGGTACAAGCATGTTCGAGAGACTTCAAAAGGCTGGCTATCCAGTAAAAATGTTGAAGACCCAATACCGGATGCATCCAGAGgtacggac-attctttcatctagcatccacctaagacagattctcactgaatatcagatttcttaaagaattatcatcagttgatacctatttcacaaaccaagccaaagattgtagttagcttaattcttactccaatgattgcatcttattttaccctgcaaacaatttttttaactgaaaatcag
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TTATGGCATGAGCTTGTTCAAGAGATTCCAGAGGGCCGGCTATCCAGTACAAATGCTGAAAACACAATACCGCATGCATCCAGAGgttaggcctgaacttttagccaa-gtttgcaaaagatggaattttg-----tgtctgatgtc--agaatattagcaatgaccactactaatattcagaatattgatga--------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116422172|gb|EG464764.1|EG464764EST: CTGGCTATCCAGTAAAAATGTTGAAGACCCAATACCGGATGCATCCAGAG ATAAGAAGCTTTCCGTCAAAGCAATTCTATGAAGGGGCACTAGAAGATGGA
genomic: CTGGCTATCCAGTAAAAATGTTGAAGACCCAATACCGGATGCATCCAGAGgtacggacat ... tgaaaatcagATAAGAAGCTTTCCGTCAAAGCAATTCTATGAAGGGGCACTAGAAGATGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACGGTACAAGCATGTTCGAGAGACTTCAAAAGGCTGGCTATCCAGTAAAAATGTTGAAGACCCAATACCGGATGCATCCAGAGgtacggacattctttcatctagcatccacctaagacagattctcactgaatatcagatttcttaaagaattatcatcagttgatacctatttcacaaaccaagccaaagattgtagttagcttaattcttactccaatgattgcatcttattttaccctgcaaacaatttttttaactgaaaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA