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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGTTGACAAAATTTGTGTCCGGATGGGTGCAAAAGATCATATCATGGCAGGACAAAGCACGTTTTTAACAGAACTTTCAGAAACTGCGGTAATGTTGgtaagtaatgttcattctgtttgtcaaattgattacatgaagctttctaagataaatgtgaaacttgccacagtggttacccttttgagagttggtcacaggctttgttaaactatgcgaatgccaacaaacgcactgatagaatgttttatattaataatatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G02070.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02070.2 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA19G40350.1 (Glycine max), 5'ss of exon 17
GCCTGTTGACAAAATTTGTGTCCGGATGGGTGCAAAAGATCATATCATGGCAGGACAAAGCACGTTTTTAACAGAACTTTCAGAAACTGCGGTAATGTTGgtaagtaatgttcattctgtttgtcaaattg-attacatgaagctttctaagataaatgtgaaacttgccacagtggttacccttttgagagttggtcacaggctttgttaaactatgcgaatgccaacaaacgcactgatagaatgttttatattaataatatgcag
 |||||||||   |||| |||  | ||||| || |||||| |||| |||||||| ||||| || |||||||| || ||||||||||||||   |||| |||||||  |||  | || ||  | |||| ||| || || ||||  ||     | |    || |   |  | | |  |   ||||     ||   |||    || | |||||                                                          
CCCTGTTGACCGGATTTTTGTTAGAATGGGGGCCAAAGATAATATAATGGCAGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCATCAATGCTGgtaag--atgcccctt-tgagtatcaatttgtatcacttgaaattt----gggttctcgtaag--tcactagaccgccgaccccacctag---tgggataagacgttgttgt--------------------------------------------------------

upper sequence: AT4G02070.2 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv07s0005g01370.t01 (Vitis vinifera), 5'ss of exon 17
GCCTGTTGACAAAATTTGTGTCCGGATGGGTGCAAAAGATCATATCATGGCAGGACAAAGCACGTTTTTAACAGAACTTTCAGAAACTGCGGTAATGTTGgtaagtaatgttcattctgtttgtcaaattgattacatgaagctttctaagataaatgtgaaacttgccacagtggttacccttttgagagttggtcacaggctttgttaaactatgcgaatgccaacaaacgcactgatagaatgttttatattaataatatgcag
 ||||| |||   || | |||  ||||||||||||||||| |||| ||||| || ||||| || ||||||||||| ||||| ||||||||    ||| ||||  |     ||  |    ||       || |||||   | | |   |    |       ||   |     |    ||    ||||||||       | ||                                                                  
ACCTGTGGACCGCATCTTTGTTAGGATGGGTGCAAAAGATAATATTATGGCTGGCCAAAGTACATTTTTAACAGAGCTTTCTGAAACTGCATCTATGCTGgtgggattcctttttctaattcaattcttttattactaaatgttccattgcttctggtccaagtatatggtatc--ttgatgttttgagaagcttgtaaaga-----------------------------------------------------------------