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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCTGGGCTCTTAGCAAATATTTCCCCAATGTCAAAACCTTTGTCCGTGCACATGACGTTGATCATGGTCTCAATCTTGAAAAAGCCGGCGCTACCGCTgtaataacttccacaacttttctattctccttctgtcattgcacaacattttcaaagtaaactgattaaaatctcgatacaaaaactcgttag

Basic information

species Arabidopsis thaliana
transcript AT4G00630.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G00630.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 21
TGTCTGGGCTCTTAGCAAATATTTCCCCAATGTCAAAACCTTTGTCCGTGCACATGACGTTGATCATGGTCTCAATCTTGAAAAAGCCGGCGCTACCGCTgtaataacttccacaacttttcta---ttctccttctg-tcattgcaca--acattttcaaagtaaactgattaaaatctcgatacaaaaactcgttag--
 || |||||| | ||||| || ||||| ||||| || || ||||| ||||| |||||||||||||||||  | ||| | ||||| || || ||||| |||||||||  |  || | || |||||   ||| || | || | |    |    ||| ||||||| ||     |  |     |  | |||   |  | |  |  
AGTTTGGGCTTTAAGCAAGTACTTCCCAAATGTGAAGACTTTTGTTCGTGCCCATGACGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCTACTGCTgtaata-ttctcatacctattctagcgttccccgtttgattacctgatggtacaatttcaaaatagtggtagcatttggtaaacacattcaagcatctgaa

upper sequence: AT4G00630.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 17
TGTCTGGGCTCTTAGCAAATATTTCCCCAATGTCAAAACCTTTGTCCGTGCACATGACGTTGATCATGGTCTCAATCTTGAAAAAGCCGGCGCTACCGCTgtaataacttccacaacttttctattctcctt-ctgtcattgcacaac------attttcaaagt--------------aaactgattaaaatctcgatacaaaaactcgttag----------------------------------------------
 || |||||||| |||||  | ||||| || || || || ||||||||||| ||||| |||||||||||  | ||| | ||||| || || |||||||||||||||   |    | |||||||||| |   |  | | |||||   |       |||||  ||||              | ||  ||| | || | |  | || |    ||||                                               
AGTTTGGGCTCTGAGCAAGCACTTCCCAAACGTGAAGACTTTTGTCCGTGCTCATGATGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCTACCGCTgtaatattctat-taccttttctattatgaatgttatgattgccttatggtataattttggaagtgtttttctttactaatacatatttagatttagccaaaatactctgttaatcttctctgtcttatctctttatctctctgcctcttgcatttgcag

upper sequence: AT4G00630.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 16
TGTCTGGGCTCTTAGCAAATATTTCCCCAATGTCAAAACCTTTGTCCGTGCACATGACGTTGATCATGGTCTCAATCTTGAAAAAGCCGGCGCTACCGCTgtaataacttccacaacttttctattctccttctgtcattgcacaacattttcaaagtaaactgattaaaatctcgata--caaaaactcgttag-----------------------------------------------------------------------------------------------------
||| ||||| || ||||| ||||| |||||||| ||||| ||||||||||| ||||| ||||||||||| || ||| | ||||| || || || || || |||  |        |  ||  || ||    |||||| |||     || | ||     |  | ||  | |  | | || |  | | ||||  | |                                                                                                      
TGTTTGGGCCCTGAGCAAGTATTTTCCCAATGTGAAAACATTTGTCCGTGCTCATGATGTTGATCATGGCCTTAATTTGGAAAAGGCTGGGGCAACAGCGgtatcattaattttactttccctttttctattctgtaattttttgacctcttgggcatttattgcattagttattgaaaatctacaactactaaaactaatacctattatcggagtatattttcttagggtttttgtcttcccttctaaatcaccccttgacttttattttgcatcatctgttaaaaaacatacag

upper sequence: AT4G00630.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: EFJ10973 (Selaginella moellendorffii), 5'ss of exon 15
TGTCTGGGCTCTTAGCAAATATTTCCCCAATGTCAAAACCTTTGTCCGTGCACATGACGTTGATCATGGTCTCAATCTTGAAAAAGCCGGCGCTACCGCTgtaa-taacttccacaacttttct-----attctccttctgtcattgcacaacattttcaaagtaaactgattaaaatctcgatacaaaaactcgttag
||| |||||||| ||||||||||| ||||| ||||| || | ||| ||||| |||||||| ||||| ||  |||| || || ||||| || || |||||||||| |  |||   |   | | |      | || ||||  ||  |||     ||||                                           
TGTGTGGGCTCTGAGCAAATATTTTCCCAAAGTCAAGACTTATGTGCGTGCTCATGACGTCGATCACGGCATCAACCTGGAGAAAGCAGGAGCAACCGCTgtaagtcgctttggcccttctacgcaaaaagtcaccttgggtt-ttggttggcattacag---------------------------------------