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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACCGAGACTTGAAACCGGAAAACGTTTTAATCCAAGGCAATGGCGATATCTCTTTGTCGGATTTTGATCTGTCTTGCTTGACATCTTGCAAACCTCAGgtttgatttctctcaacctttcccttcagattgtttccacttctactagagagtttgctcatgtatactaattaagggtgattaatgaatcttgtag

Basic information

species Arabidopsis thaliana
transcript AT3G45780.1
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125259093|gb|EL273178.1|EL273178
EST:     TCTCTTTGTCGGATTTTGATCTGTCTTGCTTGACATCTTGCAAACCTCAG                         CTGTTGATTCCGAGTATAGACGAGAAGAAGAAGAAAAAGCAACAAAAGAG
genomic: TCTCTTTGTCGGATTTTGATCTGTCTTGCTTGACATCTTGCAAACCTCAGgtttgatttc ... aatcttgtagCTGTTGATTCCGAGTATAGACGAGAAGAAGAAGAAAAAGCAACAAAAGAG
EST: gi|124961235|gb|EL035789.1|EL035789
EST:     TCTCTTTGTCGGATTTTGATCTGTCTTGCTTGACATCTTGCAAACCTCAG                         CTGTTGATTCC
genomic: TCTCTTTGTCGGATTTTGATCTGTCTTGCTTGACATCTTGCAAACCTCAGgtttgatttc ... aatcttgtagCTGTTGATTCC