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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGATTCTGATGGATAAAACTGCTGGTGATGGGGCTGATAGTGCAGAAGATTCAGGGAATTCTCAGTCTTATCCATCCACTTTGCCTGGCATACCAAAGgtttttctatagctctgagatggtgaacaaagtgtcttctatgcttagactaattaaatgccctggatatgtctgtgatattcag

Basic information

species Arabidopsis thaliana
transcript AT3G24870.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24870.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA08G46710.1 (Glycine max), 5'ss of exon 20
-------------------------TAAGATTCTGATGGATAAAACTGCTGGTGATGGGGCTGATAGTGCAGAAGATTCAGGGAATTCTCAGTCTTATCCATCCACTTTGCCTGGCATACCAAAGgtttttctatagctctgagatggtgaacaaagtgtcttctatgcttagactaattaaatgccctggatatgtctgtgatattcag
                          || ||| | ||||||| |||| |||| ||||| || ||||| || ||||| ||||||  ||||||||||||||| || ||  | ||||| || |||||||  |   ||   || | |  ||||  |   | |   ||     ||     ||   |||    |    | ||||            
AACCAAAAGAGTGCAAGGAGCGTCACAAAATTTTAATGGATAGAACTTCTGGGGATGGTGCAGATAGCGCGGAAGACTCAGGGTCTTCTCAGTCTTATCCgtctacactacctggaattccaaaggcatgaatacttctattatttggtttaattactcatttggtccctatagttacaaaaactttccctttttgtccc----------

upper sequence: AT3G24870.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA03G18730.1 (Glycine max), 5'ss of exon 8
TAAGATTCTGATGGATAAAACTGCTGGTGATGGGGCTGATAGTGCAGAAGATTCAGGGAATTCTCAGTCTTATCCATCCACTTTGCCTGGCATACCAAAGgtttttctatagctctgagatggtgaacaaagtgtcttctatgcttagactaattaaatgccctggatatgtctgtgatattcag
    | | | ||||||| |||| | || ||||| || |||||||| ||||||||||||  ||| ||||||||||| || || || ||||| || || ||||  |     ||  | |    |            || ||  ||  ||||                                     
----ACTTTAATGGATAGAACTACCGGGGATGGTGCAGATAGTGCTGAAGATTCAGGGTCTTCACAGTCTTATCCTTCTACATTACCTGGAATTCCTAAGGCAT-

upper sequence: AT3G24870.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv07s0005g06680.t01 (Vitis vinifera), 5'ss of exon 17
TAAGATTCTGATGGATAAAACTGCTGGTGATGGGGCTGATAGTGCAGAAGATTCAGGGAATTCTCAGTCTTATCCATCCACTTTGCCTGGCATACCAAAGgt-----tttt----ctatagctctgagatggtgaacaaagtgtcttctatgcttagactaattaa-atgccctggatatgtctgtgatattcag----------------------------------------------
 || ||| | |||||||  |||||||||||||||||||||||||| ||||||||||||   |||||| |||||||||| || ||||||||||| ||||||||     ||||     |     | ||| | | |  | | |||  ||| | |  ||      ||| |  |   || | ||      ||| ||| ||                                              
CAAAATTTTAATGGATAGGACTGCTGGTGATGGGGCTGATAGTGCTGAAGATTCAGGGTCATCTCAGCCTTATCCATCTACATTGCCTGGCATTCCAAAGgtaagaattttgattttccctttttgacaagttagaaatagttccttttttatttttttgtattgatgtaaacttg-tagactgttgacattgagctaattttagctgtttgaatttatctctgtttctacacttgctcag