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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACACAGTACAAAGAGTTACTATGCTTGTGTTGGAGAGAGTACACATGCTTACCAGAGCCCTTCAAAGGACCTATCTGCCATCAACAACCGCTTGAACAAgtaagtagaaaaatcacgtctctcatcagcttcttccataaaaccaatcactgacccaatccaatttcatctggtgtcacag

Basic information

species Arabidopsis thaliana
transcript AT3G12280.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12280.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 17
CACACAGTACAAAGAGTTACTATGCTTGTGTTGGAGAGAGTACACATGCTTACCAGAGCCCTTCAAAGGACCTATCTGCCATCAACAACCGCTTGAACAAgtaagtagaaaaatcacgtctctcatcagcttcttccata--aaaccaatcactgacccaatccaattt---catctggt-gtcacag-------------
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CACATAGTTCTAAAAGTTACTATGCTTGTGTTGGAGAGAGTACTCATGCTTATCAGAGCCCTTCAAAAGACCTAACTGCCATTAATAACCGATTGAATAGgtatgcgtat---ttccttgtattattaacctctgaaatatgaaggaactctcttatttgtgctaaattactcacttgtttgttatgtttgcctctcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125029119|gb|EL101388.1|EL101388
EST:     TACCAGAGCCCTTCAAAGGACCTATCTGCCATCAACAACCGCTTGAACAA                         CAGCAGCAGCAACCG
genomic: TACCAGAGCCCTTCAAAGGACCTATCTGCCATCAACAACCGCTTGAACAAgtaagtagaa ... ggtgtcacagCAGCAGCAGCAACCG
EST: gi|124779242|gb|EH869185.1|EH869185
EST:     TACCAGAGCCCTTCAAAGGACCTATCTGCCATCAACAACCGCTTGAACAA                         CAGCAGCAGCAACCG
genomic: TACCAGAGCCCTTCAAAGGACCTATCTGCCATCAACAACCGCTTGAACAAgtaagtagaa ... ggtgtcacagCAGCAGCAGCAACCG