1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TGGATTGGACCCGAACGTGATGAGAGTTTCGGGATCAAAGAAGACAGTACTTACCTCTACCAATGTGATGGATGAAAATTCCTTCTCACAGCCAGAGAAGgtaaaaatcaagagatggaagaaacatcattatcatcacaaattctgagtgttcccatgttcttattggtttttatttgcag
species | Arabidopsis thaliana |
transcript | AT3G10740.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: AGCCAGAGAAG GTTGTACCACATGAAAGCTTGCTAGAGTTGGCAGAGGAGGATATGACCGTTEST: gi|124855654|gb|EH940091.1|EH940091
genomic: AGCCAGAGAAGgtaaaaatca ... ttatttgcagGTTGTACCACATGAAAGCTTGCTAGAGTTGGCAGAGGAGGATATGACCGTT
EST: GATGAAAATTCCTTCTCACAGCCAGAGAAG GTTGTACCACATGAAAGCTTGCTAGAGTTGGCAGAGGAGGATATGACCGTTEST: gi|124724642|gb|EH816044.1|EH816044
genomic: GATGAAAATTCCTTCTCACAGCCAGAGAAGgtaaaaatca ... ttatttgcagGTTGTACCACATGAAAGCTTGCTAGAGTTGGCAGAGGAGGATATGACCGTT
EST: AGCCAGAGAAG GTTGTACCACATGAAAGTCTTTGCTAGAGTTGGCAGAGGAGGATATGACCG
genomic: AGCCAGAGAAGgtaaaaatca ... ttatttgcagGTTGTACCACATGAAAG-C-TTGCTAGAGTTGGCAGAGGAGGATATGACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATTGGACCCGAACGTGATGAGAGTTTCGGGATCAAAGAAGACAGTACTTACCTCTACCAATGTGATGGATGAAAATTCCTTCTCACAGCCAGAGAAGgtaaaaatcaagagatggaagaaacatcattatcatcacaaattctgagtgttcccatgttcttattggtttttatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA