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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAGgtaaaactttcttttgaagctccaaactgaagtgattctgaaaataattggtattatgatttatcaatatctgagctggtgtaaatttcag

Basic information

species Arabidopsis thaliana
transcript AT3G10550.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA20G33040.1 (Glycine max), 5'ss of exon 11
ACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAGgtaaaactttcttttgaag-----------ctccaaactgaagtgattctgaaaataattggtattatgatttatcaatatctgagctggtgtaaatttcag
 |||||||||| || ||  | || ||| ||||||| ||||||||||| ||||||||||| ||||||||   | ||  |||| |            ||   ||  || ||| |  |    ||  ||  |  |   | || ||| | |   |  | ||| |   | |  
GCTTTCCTGGTGGACTTCGTAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAGgtacttcctttgtttgcaatttgtcttctccttggaatggatgtggtcattggcatcctttttcctgacacttctcact-ttgaattttgtgaaggatacc-

upper sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA10G34510.1 (Glycine max), 5'ss of exon 11
ACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAGgtaaaactttcttttgaagctc-----caaactgaagtgattctgaaaataattggtattatgatttatca-atatctgagctggtgtaaatttcag------
 |||||||||| || ||  | || ||| ||||||| ||||||||||| ||||||||||| ||||||||   | ||  |||| | ||      |    || | ||  | ||    | ||||| ||  |  ||  | | |  ||| |  | |  |    |  |       
GCTTTCCTGGTGGACTTCGTAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAGgtacttcctttgtttgcaacttgttttctccttggaatggatgtgg---tcattggcatcctttttcctgacacttctcactttgaatgttgtgaaagataag

upper sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: PP1S71_215V6.1 (Physcomitrella patens), 5'ss of exon 17
ACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAGgtaaaactttcttttgaagct--ccaaactgaagt--gattctgaaaata-attggtattatgatt-tatcaat--atctgagctggtgtaaatttcag--
 | ||||| || ||  |  |||||||| ||||||||||||| || ||||||||| | |||||||||| |  || || |   |   |  | |  || | |   |||  ||||| ||   |   ||  | |||  |  | |  ||  || |   |  | || |||   
GCCTTCCTTGTGGAGCTCTTGGATTGCGTGCTTTCATGTCGGTTCGGGAACTTCCTCTGCAACAGgtgat-ctatcctgcaatcttggcgatgctcatgcaagatcatgaaattatgctttcatcgttattgcaaaagtcaattcgaccaaatagacatgtcatcc

upper sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: EFJ37924 (Selaginella moellendorffii), 5'ss of exon 26
ACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAGgtaaaactttcttttgaagctccaaactgaagtgattctgaaaataattggtattatgatttatcaatatctgagctggtgtaaatttcag
 | || || || || || ||||| | | | || || |||||||| ||||||||||||||||||||||||    | |||||    ||      | || | | |   |||| |  |||| ||                                    
GCGTTTCTTGTCGAATTCATGGACTCCGTTCTATCTTGTCGTTTCGGGAACTTCTTATGCAACAGgtaattggtgcttttt---cttgggcttcaactcact---aaaacacgtggtgtttcag--------------------------------