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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTCTGAATCTGAGTACTTTAAGCAAACATTGCGGCAAGGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCGCGCATGCCCCAGTTgtgagtacctcaacaacctccatctcattgttgaatgccttttccctgttttgatgattttcttacactagaaatctaatttattgtccctctttcag

Basic information

species Arabidopsis thaliana
transcript AT3G06400.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06400.3 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 17
CTACTCTGAATCTGAGTACTTTAAGCAAACATTGCGGCAAGGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCGCGCATGCCCCAGTTgtgagtacctcaacaacctccatctcattgttgaatgccttttccctgttttgatgattttcttacactagaaatctaatttattgtccctctttcag
 ||||| || ||||| ||||||||||||||| ||||||||||||||||||| ||||  | |||||||||||| ||||||||||||||| ||| || | |||    | ||  ||  | || ||| ||   |  |   |||||| ||    ||  ||   |     |||  ||| | |            
TTACTCAGAGTCTGAATACTTTAAGCAAACAATGCGGCAAGGTGCTCCAGCAAAACAAAGAGAGCCTAGAATACCGCGCATGCCCCAGCTgtaagcatctctttgaactg-attgctttcttggat-tgtagttgatgttttcatctgctttatatgttttgcctctg-tttttag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116473628|gb|EG516220.1|EG516220
EST:     GGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCGCGCATGCCCCAGTT                         GCACGATTTCCAGTTCTTTAACATTCAGAGATTGACCGAGTTGTATGAAAA
genomic: GGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCGCGCATGCCCCAGTTgtgagtacct ... cctctttcagGCACGATTTCCAGTTCTTTAACATTCAGAGATTGACCGAGTTGTATGAAAA
EST: gi|116473629|gb|EG516221.1|EG516221
EST:     GGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCGCGCATGCCCCAGTT                         GCACGATTTCCAGTTCTTTAACATTCAGAGATTGACCGAGTTGTATGAAAA
genomic: GGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCGCGCATGCCCCAGTTgtgagtacct ... cctctttcagGCACGATTTCCAGTTCTTTAACATTCAGAGATTGACCGAGTTGTATGAAAA