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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATACCAAAAAGCGATGGTGATGGCGAAGAAGAAAGACCAGTAGAGGCCCTTATGGTTCTGAAATATGGCGGTGTTTTAACACACGCTGGTAGAAAGCAGgtatactaccattcagtatcagaaaataattgcaaaatttgagatttctgttactaaatggagggtatcttatggtagcttatccaacacaagcgcaggcagttggtgtattcttgtctaatttttttgatgtatgcttcatctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G01310.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01310.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA09G37610.1 (Glycine max), 5'ss of exon 14
AATACCAAAAAGCGATGGTGATGGCGAAGAAGAAAGACCAGTAGAGGCCCTTATGGTTCTGAAATATGGCGGTGTTTTAACACACGCTGGTAGAAAGCAGgtatactaccattca-gtatcagaaaataat--tgcaaaatttgagatttctgttactaaatggagggtatcttatggtagcttatccaacacaagcgcaggcagttggtgtattcttgtctaatttttttgatgtatgcttcatctgcag
| |  | |||||| ||||||| || | ||||||| |||| || || || || |||||||| |||||||| |||||| | ||||| ||||| |||||||||||  |     ||  |   |||| | |||  |  |||  | |||||| ||      | |  || |  | | |  | || |||   ||  || |   | |       |||      |||| |||| || | ||||| | |  ||| | || ||
AGTGGCCAAAAGCAATGGTGAAGGTGCAGAAGAACGACCTGTTGAAGCTCTGATGGTTCTTAAATATGGGGGTGTTCTTACACATGCTGGCAGAAAGCAGgttcagattgataaacacatcaaagaatgtttctgctcagtttgagtttg-----attgtattgctgttgtagt-tgatagtaaatgtaagatttgtgtttatgattg------tctt-tctagttgtattgatttttttttcctttgtag

upper sequence: AT3G01310.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA13G05060.1 (Glycine max), 5'ss of exon 18
---AATACCAAAAAGCGATGGTGATGGCGAAGAAGAAAGACCAGTAGAGGCCCTTATGGTTCTGAAATATGGCGGTGTTTTAACACACGCTGGTAGAAAGCAGgtat------actaccattcagtatcagaaaataattgcaaaatttgagatttc-tgttactaaatggagggtatcttatggtagcttatccaacacaagcgcaggcagttggtgtattcttgtctaatttttttgat-gtatgcttcatctgcag
   | |  ||||| || ||||||| |  |||||| ||   || || || || ||||||||||| |||||||| |||||| | ||||| ||||| |||||||||||        ||   |||  |  ||   ||  |   |||  | ||||| | |   | ||| || |  |      | |||| || |   ||  || | ||       || ||      |||||  ||| || | |  ||    | || | | |||||
CAAAGTGACAAAAGGCAATGGTGAAGTTGAAGAACAA---CCTGTTGAAGCTCTTATGGTTCTTAAATATGGTGGTGTTCTTACACATGCTGGCAGAAAGCAGgttctgattaacagacatataagatacaaatgtttctgcgcagtttgacactgaattttattatactgc-----tattattgttgagaataaaaaataattttt--catttaaaagcttctttcctagttgtatgaattactttctccttttgcag

upper sequence: AT3G01310.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA19G02260.1 (Glycine max), 5'ss of exon 14
AATACCAAAAAGCGATGGTGATGGCGAAGAAGAAAGACCAGTAGAGGCCCTTATGGTTCTGAAATATGGCGGTGTTTTAACACACGCTGGTAGAAAGCAGgtat--actaccattcagtatcagaaaataattgcaaaatttgagatttctgttactaaatggagggtatcttatggtagcttatccaacacaagcgcaggcagttggtgtattcttgtctaatttttttgat-gtatgcttcatctgcag
 | |   | ||  ||   || ||  |  ||||||  ||| || || || ||||||||||| |||||||| |||||| | ||||| ||||| |||||||||||    | || ||  || ||| ||| |  |||      | |             | |  ||      | | |||| || |   ||  || | ||       || ||      |||||  ||| || | |  ||    | ||   | |||||
CAAAATGACAAATGACAATGGTGAAGTTGAAGAACAACCTGTTGAAGCTCTTATGGTTCTTAAATATGGTGGTGTTCTTACACATGCTGGCAGAAAGCAGgttctgattaacagaca-tataagatacaaatgattctactcagttgaggctgaattttatcatacttctattattgttgagaataaaaaagaattttt--catttaaaaccttctttcctagttgtatgaattactttctctttttgcag

upper sequence: AT3G01310.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv14s0066g02540.t01 (Vitis vinifera), 5'ss of exon 16
AATACCAAAAAGCGATGGTGATGGCGAAGAAGAAAGACCAGTAGAGGCCCTTATGGTTCTGAAATATGGCGGTGTTTTAACACACGCTGGTAGAAAGCAGgtat-actaccattcagtatcagaaaataattgcaaaatttgagatttctgttactaaatggagggtatcttatggtagcttatccaacacaagcgcaggcagttggtgtattcttgtctaatttttttgatgtatgcttcatctgcag
| | ||||||||  ||||||| || ||||||||| | || || || || ||||||||||| |||||||| |||||| | ||||| ||||| |||||||||||   | |   | | | | |   | | |  || |   |||| | |||| | ||   |  |  |   |   ||  | |    |  |      ||       ||                                               
AGTTCCAAAAAGTAATGGTGAAGGTGAAGAAGAACGGCCTGTTGAAGCTCTTATGGTTCTTAAATATGGTGGTGTTCTTACACATGCTGGCAGAAAGCAGgtgccaatgttaatgactcttccaga-tgttttctgtatttta-atttgtatttgcattttaaccttgaatttggatgatatcacttttggaaattacacca-----------------------------------------------