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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATCCGTTCTCTGGAGCGGATGCTACAATACGGAGAACAAAACATTCGGCGTGCTGTGCCTTTGGCCCTTGGTCTCCTTTGTATATCCAATCCAAAGgtaaatacttttgtaaatgtagttttactgcacctgcttacaattattagtgggcgtctagagtaatactgggtttttaatatttttcccacaattccag

Basic information

species Arabidopsis thaliana
transcript AT2G20580.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20580.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 19
GGAGATCCGTTCTCTGGAGCGGATGCTACAATACGGAGAACAAAACATTCGGCGTGCTGTGCCTTTGGCCCTTGGTCTCCTTTGTATATCCAATCCAAAGgtaaat---acttttgtaaatgtagttttactgcacctgct-tacaattattagtgggcgtctagagtaatactgggtttttaatatttttcccacaattccag--------------------------------------------------
||  || || ||  | || |   | |||||||| ||||| || || ||||| || || || ||||||||||||||||| || |||||||| ||||||||||||||    ||||   |   || | |||||   |    ||  | | || |||     | ||  |    | |||   | | |||| |  |  |  | | ||  ||                                                  
GGCAATTCGATCATTAGAACATCTTCTACAATATGGAGAGCAGAATATTCGCCGAGCAGTTCCTTTGGCCCTTGGTCTACTCTGTATATCAAATCCAAAGgtaaaatggacttgcttccctgcatttttatcactttggcagtgctatcattgaacagtgtgaaacacattaccttgctcttaaaagatgac--atagttgtagggctgcaagatgccactaacttttgctaacttttctctgaataattacag

upper sequence: AT2G20580.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 19
GGAGATCCGTTCTCTGGAGCGGATGCTACAATACGGAGAACAAAACATTCGGCGTGCTGTGCCTTTGGCCCTTGGTCTCCTTTGTATATCCAATCCAAAGgtaaa---tacttttgtaaatgtagttttactgcacctgct-tacaattattagtgggcgtctagagtaatactgggtttttaatatttttcccacaattccag--------------------------------------------------------
|| ||| || ||  | || |   | |||||||| ||||| || || ||||| || || || |||||||| |||||||| || |||||||| ||||||||||||||    ||||   |   || | ||| |   |   |||  |   ||||||     | ||  |    | |||   | | | || |  |  |  | | ||  ||                                                        
GGCGATTCGATCATTAGAACATCTTCTACAATATGGAGAGCAGAATATTCGCCGAGCAGTTCCTTTGGCACTTGGTCTACTCTGTATATCAAATCCAAAGgtaaaatggacttgcttccctgca-tttcatgacttttgcagtgttattattgaacagtgtgaaacacattaccttgctctgaaaagatgacttatagttgtagggctgcaactgcaagatgtcaccaacttttgctaactttttactaaatcattctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86050680|gb|DR346435.1|DR346435
EST:     GGCGTGCTGTGCCTTTGGCCCTTGGTCTCCTTTGTATATCCAATCCAAAG                         GTGACTGTAATGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAA
genomic: GGCGTGCTGTGCCTTTGGCCCTTGGTCTCCTTTGTATATCCAATCCAAAGgtaaatactt ... acaattccagGTGACTGTAATGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAA
EST: gi|164051982|gb|ES204782.1|ES204782
EST:     CCTTTGTATATCCAATCCAAAG                         GTGACTGTAATGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAA
genomic: CCTTTGTATATCCAATCCAAAGgtaaatactt ... acaattccagGTGACTGTAATGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAA
EST: gi|86050682|gb|DR346437.1|DR346437
EST:     GGCGTGCTGTGCNTTTGGCCCTTGGTCTCCTTTGTATATCCAATCCAAAG                         GTGACTGTAATGGACACCTTGAGCCGG
genomic: GGCGTGCTGTGCCTTTGGCCCTTGGTCTCCTTTGTATATCCAATCCAAAGgtaaatactt ... acaattccagGTGACTGTAATGGACACCTTGAGCCGG
EST: gi|86050679|gb|DR346434.1|DR346434
EST:     GGCGTGCTGTGCCTTTGGCCCTTGGTCTCCTTTGTATATCCAATCCAAAG                         GTGACTGTAATGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAA
genomic: GGCGTGCTGTGCCTTTGGCCCTTGGTCTCCTTTGTATATCCAATCCAAAGgtaaatactt ... acaattccagGTGACTGTAATGGACACCTTGAGCCGGCTTAGCCATGACACAGATTCGGAA