1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
AAAGATGCCATGGAAGACTCTGTTGAAATAGTGATCGAAAAGCTGCTTCATGTCTCAAAGGACACCGTTCCAAAAgtaacgattgcatgctcaaacctttttcttgtggatcaacccctttttctgtatgtctccagatctcatatgataatatcttttcag
species | Arabidopsis thaliana |
transcript | AT2G20190.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GACACCGTTCCAAAA GTTTCCACTGAAGCTGAGCAATGTTTGACCACAGTCTTGTCCCAATACGATEST: gi|164127622|gb|ES046324.1|ES046324
genomic: GACACCGTTCCAAAAgtaacgattg ... atcttttcagGTTTCCACTGAAGCTGAGCAATGTTTGACCACAGTCTTGTCCCAATACGAT
EST: TAGTGATCGAAAAGCTGCTTCATGTCTCAAAGGACACCGTTCCAAAA GTTTCCACTGAAGCTGAGCAATGTTTGACCACAGTCTTGTCCCAATACGATEST: gi|125023776|gb|EL096045.1|EL096045
genomic: TAGTGATCGAAAAGCTGCTTCATGTCTCAAAGGACACCGTTCCAAAAgtaacgattg ... atcttttcagGTTTCCACTGAAGCTGAGCAATGTTTGACCACAGTCTTGTCCCAATACGAT
EST: AAATAGTGATCGAAAAGCTGCTTCATGTCTCAAAGGACACCGTTCCAAAA GTTTCCACTGAAGCTGAGCAATGTTTGACCACAGTCTTG
genomic: AAATAGTGATCGAAAAGCTGCTTCATGTCTCAAAGGACACCGTTCCAAAAgtaacgattg ... atcttttcagGTTTCCACTGAAGCTGAGCAATGTTTGACCACAGTCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGATGCCATGGAAGACTCTGTTGAAATAGTGATCGAAAAGCTGCTTCATGTCTCAAAGGACACCGTTCCAAAAgtaacgattgcatgctcaaacctttttcttgtggatcaacccctttttctgtatgtctccagatctcatatgataatatcttttcag
- - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - GCTGCT