1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GCTGAGGTAGACCGGAAACCACTACACCGGGCTGCAAGATACTTGATTAATGCTCAAATGGAGAATGGTGATTTTCCACAACAGgtaacaagttgcatcaaccacatcattgtttggattttctcttagttaacggttaagtgattatcttgactctctatatcag
species | Arabidopsis thaliana |
transcript | AT2G07050.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: CAAGATACTTGATTAATGCTCAAATGGAGAATGGTGATTTTCCACAACAG GAAATAATGGGAGTCTTCAATAGGAACTGCATGATAACATATGCCGCGTATEST: gi|116474685|gb|EG517277.1|EG517277
genomic: CAAGATACTTGATTAATGCTCAAATGGAGAATGGTGATTTTCCACAACAGgtaacaagtt ... tctatatcagGAAATAATGGGAGTCTTCAATAGGAACTGCATGATAACATATGCCGCGTAT
EST: CAAGATACTTGATTAATGCTCAAATGGAGAATGGTGATTTTCCACAACAG GAAATAATGGGAGTCTTCAATAGGAACTGCATGATAACATATGCCGCGTATEST: gi|164159909|gb|ES027685.1|ES027685
genomic: CAAGATACTTGATTAATGCTCAAATGGAGAATGGTGATTTTCCACAACAGgtaacaagtt ... tctatatcagGAAATAATGGGAGTCTTCAATAGGAACTGCATGATAACATATGCCGCGTAT
EST: TTAATGCTCAAATGGAGAATGGTGA-TTTCCACAACAG GAAATAATGGGAGTCTTCAATAGGAACTGCATGATAACATATGCCGCGTATEST: gi|116424254|gb|EG466846.1|EG466846
genomic: TTAATGCTCAAATGGAGAATGGTGATTTTCCACAACAGgtaacaagtt ... tctatatcagGAAATAATGGGAGTCTTCAATAGGAACTGCATGATAACATATGCCGCGTAT
EST: CAAGATACTTGATTAATGCTCAAATGGAGAATGGTGATTTTCCACAACAG GAAATAATGGGAGTCTTCAATAGGAACTGCATGATAACATATGCCGCGTAT
genomic: CAAGATACTTGATTAATGCTCAAATGGAGAATGGTGATTTTCCACAACAGgtaacaagtt ... tctatatcagGAAATAATGGGAGTCTTCAATAGGAACTGCATGATAACATATGCCGCGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGAGGTAGACCGGAAACCACTACACCGGGCTGCAAGATACTTGATTAATGCTCAAATGGAGAATGGTGATTTTCCACAACAGgtaacaagttgcatcaaccacatcattgtttggattttctcttagttaacggttaagtgattatcttgactctctatatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA