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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGGTGGGACGTTATTGACAATGTGCTCAAGTGATTTTATATGCTTCTATGATTGGGCGGAATGTAGGTTGATTAGGCGAATAGATGTTACTGTCAAAgtaagtgcttatataccagaagtagatccattagtttctacaagaaaatagtttataggttacgttttcagtaatatttttattggagaaatacaaaagagttccttatctgaaatttaaacgcaaaagcagattggtactgctcgcttattcacttttaacgtttttgtttattcaatgtttcag

Basic information

species Arabidopsis thaliana
transcript AT1G79990.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
TTTTGGTGGGACGTTATTGACAATGTGCTCAAGTGATTTTATATGCTTCTATGATTGGGCGGAATGTAGGTTGATTAGGCGAATAGATGTTACTGTCAAAgtaagtgcttatataccagaagtagatccattagtttctacaagaaaatagt-ttataggttacgttttcagtaatatttttattggagaaatacaaaagagttccttatctgaaatttaaacgcaaaagcagattggtactgctcgcttattcacttttaacgtttttgtttattcaatgtttcag
 |||||||| ||  ||||| |||||||||||| |||||| || ||||| ||||||||||| ||||| ||||||||| | || || ||||||| ||| |||||||||||||  ||      |    | |  |  | || ||        || | ||    ||||  |||     ||| || || |   ||                                                                                                  
ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtgacatcagctttctgcttttatttcttcttactgtttcttgttaattttgttaaaattttcttgtgtcag--------------------------------------------------------------------------------------------------

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 13
TTTTGGTGGGACGTTATTGACAATGTGCTCAAGTGATTTTATATGCTTCTATGATTGGGCGGAATGTAGGTTGATTAGGCGAATAGATGTTACTGTCAAAgtaagtgcttatataccagaagtagatccattag-tttctacaagaaaatagt-ttataggttacgttttcagtaatatttttattggagaaatacaaaagagttccttatctgaaatttaaacgcaaaagcagattggtactgctcgcttattcacttttaacgtttttgtttattcaatgtttcag
 ||||| || ||  ||||| |||||||||||| |||||| || ||||| || |||||||  || |||||||||||| | || || ||||||| ||| |||||||||||||  ||    || || |   ||| || ||||| |    |  |  | |||  | ||    |||  || | |||||| |||    |                                                                                                
ATTTGGCGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTACGATTGGGTTGAGTGTAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcat----gaggtgg---catcagctttctgcttttatttcttcttactgtttcttatttttgttaaatttttcttgtgtcag-----------------------------------------------------------------------------------------------

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 13
TTTTGGTGGGACGTTATTGACAATGTGCTCAAGTGATTTTATATGCTTCTATGATTGGGCGGAATGTAGGTTGATTAGGCGAATAGATGTTACTGTCAAAgtaagtgcttatataccagaagtagatccattagtttctacaagaaaatagtttataggttacgttttcagtaatatttttattggagaaatacaaaagagttccttatctgaaatttaaacgcaaaagcagattggtactgctcgcttattcacttttaacgtttttgtttattcaatgtttcag
|||||| || || |||||| |||||||||||| ||||||||| || |||||||| ||||| ||||| ||| ||||| | ||||| ||||||| ||||||||||||  || | ||          |  |  || |   ||||      || ||||  | |  ||  |  ||| |||   || | ||      |         ||  || |     |||| |                                                                  
TTTTGGAGGAACTTTATTGGCAATGTGCTCAAATGATTTTATTTGTTTCTATGACTGGGCTGAATGCAGGCTGATTCGACGAATTGATGTTAATGTCAAAgtaagcactaacatgat-------ggcctgttgg---ctaccgtggtattgttttcatgccacactg-caggaattgattaaatgttccttttttcttttctttttttttcactatttcag-----------------------------------------------------------------