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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAACCTAGTTGGGCTTGTCGGGTTCTGCTTCGAGCAAGGCGAGCAGATTCTAGTCTACGAATACATGTCCAACGGATCACTAAAAGATAGCTTAACCGgtactgaaaaatctggcctttaggtgctcaataaatcacaaacacaaaacttgaccattacgtattgtttttag

Basic information

species Arabidopsis thaliana
transcript AT1G79620.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79620.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: LOC_Os03g21230.1 (Oryza sativa), 5'ss of exon 15
AAGAACCTAGTTGGGCTTGTCGGGTTCTGCTTCGAGCAAGGCGAGCAGATTCTAGTCTACGAATACATGTCCAACGGATCACTAAAAGATAGCTTAACCGgta---ctgaaaaat---ctggcctttaggtgctcaataaatcacaa------acacaaaacttgaccattacgtattgtttttag----------
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AAGAACCTCGTCGGCCTCGTCGGATTCTGCTTCGAGCAGGGCGAGCAGATGCTCGTCTACGAGTTCATGTCCGCCGGCACCCTCCGCGACAGCCTCTCCGgtaaaaccacaaaccacatttgtccgtgcgttcctgacgcgccgcgcgttcttgcacggcacgcgccctgaacttgttggatttttttctttgcag