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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTCAGCACTTGGGGATGTCATATTTGCTTTAGCGCACAAGAACCCTCATGTTCCTTACAGAAACAGCAAATTGACTCAAGTCCTTCAAAGTTCTTTGGgtaagtatcactctctgaagaaaatagatttgtttatatgtattgcataaaattgatgtttgctttatgttgttgattcccttagctattctctcttttttcttag

Basic information

species Arabidopsis thaliana
transcript AT1G63640.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GRMZM2G173700_T01 (Zea mays), 5'ss of exon 14
TTGTCAGCACTTGGGGATGTCATATTTGCTTTAGCGCACAAGAACCCTCATGTTCCTTACAGAAACAGCAAATTGACTCAAGTCCTTCAAAGTTCTTTGGgtaagtatcactctctgaagaaaatagat-ttgtttatatgtattgcataaaattgatgtttgctttatgttgttgattcccttagctattctctcttttttcttag
 | || ||  | || ||||| || ||||||||  | || || |   | ||||| ||||| ||||||||||| || || ||||| |||||||||||||| |||||  |    | | |  |  |  ||||| ||   ||||| || ||  ||   |  |  |||  | ||  || |   |||    ||                     
CTCTCTGCGTTAGGTGATGTTATTTTTGCTTTGTCACAGAAAAGTGCCCATGTGCCTTATAGAAACAGCAAGTTAACACAAGTTCTTCAAAGTTCTTTAGgtaatcaaatatttatttactacctagatgttaaatatat-taatgtttatcttccaaattttatgtaccttttattttcttccag---------------------

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GRMZM2G093391_T01 (Zea mays), 5'ss of exon 2
TTGTCAGCACTTGGGGATGTCATATTTGCTTTAGCGCACAAGAACCCTCATGTTCCTTACAGAAACAGCAAATTGACTCAAGTCCTTCAAAGTTCTTTGGgtaagtatcactctctgaagaaaatagat-ttgtttatatgtattgcataaaattgatgtttgctttatgttgttgattcccttagctattctctcttttttcttag
||||| || ||||| || ||||||||| || || |||| |||||  ||||||| || ||| | ||||||||| | || |||||||| || ||||||||||||   || || |  ||||      || ||  | |||| ||||  | ||   |  | || |||    | ||  |                                  
TTGTCCGCTCTTGGAGACGTCATATTTTCTCTACCGCAGAAGAATGCTCATGTACCCTACCGGAACAGCAAACTTACACAAGTCCTACAGAGTTCTTTGGgtgcttaccattg-ctgattgttctatatactatttacatgttat-cagttatctaatatttttcatctgcag----------------------------------

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 18
TTGTCAGCACTTGGGGATGTCATATTTGCTTTAGCGCACAAGAACCCTCATGTTCCTTACAGAAACAGCAAATTGACTCAAGTCCTTCAAAGTTCTTTGGgtaagtatcactct-----ctgaagaaaatagat--------ttgtttatatgtattgcataaaattgatgttt--gctttat-gttgttga--ttcccttagctattctctcttt----tttcttag-------------
 | ||||| ||||| ||||| |||||||||||||| || ||||  |||||||| || |||||||| |||||| | ||||||||||||||||| ||||||||||  ||||  |||      |||      | | |          |||| |  || |    ||| ||||    ||   |||| | |||||| |  ||  |||  ||   ||   ||     ||||||               
CTATCAGCTCTTGGAGATGTAATATTTGCTTTAGCACAAAAGAGTCCTCATGTGCCATACAGAAATAGCAAACTAACTCAAGTCCTTCAAAGCTCTTTGGgtacatatccttctggtttttgagtcttgtggttgaaccataccgtttgtcagtgtgctttaagattgggaatttgactttgtagttgttaacattttcttgcctgggcttgtttgaccgtttctttttcctactttatag

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 12
TTGTCAGCACTTGGGGATGTCATATTTGCTTTAGCGCACAAGAACCCTCATGTTCCTTACAGAAACAGCAAATTGACTCAAGTCCTTCAAAGTTCTTTGGgtaagtatcactctctgaagaaaa-tagatttgtttat-atgtattgcataaaattgatgtttgctttatgttgttgattcccttagctattctctcttttttcttag
 ||||||| ||||| |||||||| |  || ||    || || |||  ||||||||||||  |||||||||||||||||||  |  | |||   ||||| ||| ||       ||  ||| | || | ||| || || | | ||||||||     |  |                                                  
CTGTCAGCGCTTGGAGATGTCATCTCGGCGTTGAGCCAGAAAAACGGTCATGTTCCTTATCGAAACAGCAAATTGACTCAGTTGTTGCAAGACTCTTTAGgtgag----gtgctacgaatacaactggatgtgcttcttacgtattgcacgttctgcag-------------------------------------------------

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 12
TTGTCAGCACTTGGGGATGTCATATTTGCTTTAGCGCACAAGAACCCTCATGTTCCTTACAGAAACAGCAAATTGACTCAAGTCCTTCAAAGTTCTTTGGgtaagtatcactctctgaagaaaa-tagatttgtttat-atgtattgcataaaattgatgtttgctttatgttgttgattcccttagctattctctcttttttcttag
 ||||||| ||||| |||||||| |  || ||    || || |||  ||||||||||||  |||||||||||||||||||  |  | |||   ||||| ||| ||       ||  ||| | || | ||| || || | | ||||||||      ||  |                                                
CTGTCAGCTCTTGGAGATGTCATCTCGGCGTTGAGCCAGAAAAACGGTCATGTTCCTTATCGAAACAGCAAATTGACTCAGTTGTTGCAAGACTCTTTAGgtgag----gtgctacgaatacaactggatgtgcttcttacgtattgcacgttgctgcag------------------------------------------------