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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTCGAAGTCCATCTTTTCTGGGCTGGAAAAGGAACATGTTGTATTCCTATCCAAGGGGCTTATGGGCCATTAATAGCGGCCGTCAGTGCGACACCAGgtaacacaaacggttgatatattttttttcctctgattttcactatctcccgatactagttagtgccgtgtcacatattcttgttcag

Basic information

species Arabidopsis thaliana
transcript AT1G56120.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G56120.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: LOC_Os08g10310.2 (Oryza sativa), 5'ss of exon 18
CATCTCGAAGTCCATCTTTTCTGGGCTGGAAAAGGAACATGTTGTATTCCTATCCAAGGGGCTTATGGGCCATTAATAGCGGCCGTCAGTGCGACACCAGgtaacacaaacggttgatatattttttttcctctgattttcactatctcccgatactagttagtgccgtgtcacatattcttgttcag
  ||| ||| ||||||| |||||||||||||| || || |||||||||||||| |||||    || || ||||| ||  | ||  | ||    || ||| ||||    ||   || |    ||    |     |||||  || |   | || |||   |  | | |  | |||               
TTTCTTGAAATCCATCTATTCTGGGCTGGAAAGGGCACTTGTTGTATTCCTATTCAAGGTTACTACGGACCATTGATCTCAGCATTAAGCATCACTCCAAgtaagcgtaataattaa---gttaacataaaaatgattg-cattggattccaataaatga-aatcctctttcag--------------

upper sequence: AT1G56120.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: LOC_Os08g10250.1 (Oryza sativa), 5'ss of exon 13
CATCTCGAAGTCCATCTTTTCTGGGCTGGAAAAGGAACATGTTGTATTCCTATCCAAGGGGCTTATGGGCCATTAATAGCGGCCGTCAGTGCGACACCAGgtaacacaaacggttgatatatttttttt----cctctgatttt-cactatctcccgata-ctagttagtgccgtgtcacatattcttgttcag---
    | ||  | || ||||||||||||||||||||||| ||||| |||||||  || ||  | || |||||||||||  | ||  | ||||   | ||   |   ||      ||     | ||  |      ||  || || |     |||  |  |||  ||     |    |||  ||| || |  | | |   
---ATGGAGATTCACCTTTTCTGGGCTGGAAAAGGAACTTGTTGCATTCCTAGACAGGGATCCTACGGGCCATTAATCTCAGCATTAAGTGTATCTCCTTATGgtactgttcattacctaacttgatcaagagccattggttctatgtgatcatcttataattaacatctattttgtttcattttatcctactgcag

upper sequence: AT1G56120.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: LOC_Os08g10320.3 (Oryza sativa), 5'ss of exon 17
CATCTCGAAGTCCATCTTTTCTGGGCTGGAAAAGGAACATGTTGTATTCCTATCCAAGGGGCTTATGGGCCATTAATAGCGGCCGTCAGTGCGACACCAGgtaacacaaacggttgatatattttttttcctctgattttcactatctcccgatactagttagtgccgtgtcacatattcttgttcag
   |||||| ||||||| |||||||||||||| || || ||||| |||||||| |||||    || |||||||| ||  | ||  | ||    || ||| ||||  | ||   || |  ||   |         |  ||  | |  || |   ||   |  |   | || |||               
TTCCTCGAAATCCATCTGTTCTGGGCTGGAAAGGGCACTTGTTGCATTCCTATTCAAGGTTACTACGGGCCATTGATCTCAGCATTAAGCATCACTCCAAgtaagcctaatcattaaggtaacctcaagaa---ggattatattgccttctagtaaatgaaatctctgtttcag--------------

upper sequence: AT1G56120.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: LOC_Os08g10150.1 (Oryza sativa), 5'ss of exon 12
CATCTCGAAGTCCATCTTTTCTGGGCTGGAAAAGGAACATGTTGTATTCCTATCCAAGGGGCTTATGGGCCATTAATAGCGGCCGTCAGTGCGACACCAGgtaacacaaacggttgatatattttttttcctctgattttca-----ctatctcccgatactagttagtgccgtgtcacatattcttgttcag--------
    | ||  | ||||| ||||||||||||||||| || ||||| ||||||| || ||||   ||||||||||  ||  | ||  | ||||   |          ||  | | ||    |  |          | ||||  |       ||||    | | || |   |    | | |  ||  ||  | | |        
---ATGGAGATTCATCTCTTCTGGGCTGGAAAAGGCACTTGTTGCATTCCTACCCTAGGGTTCTATGGGCCATCTATCTCAGCATTAAGTGTCTCTTTTTCGGgtactgatgcttatcttgctaaaagcataattatttctaggagatcatcttagaacaataatccattttctattatctaaactcttactgcattgaag