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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACATTTACTGTCTCTAACTTGGGAGGACCTTTTGGCATCAAGCAATTCTGTGCAGTCGTTAATCCACCTCAAGCCGCCATTCTAGCAGTTGGATCCGgtatgctctctctcaatgcagaagagagtttttttactactttaccaaagatccaataaccgattcgtgttgtgtctgattcttaaaaaaaaaaaaaacag

Basic information

species Arabidopsis thaliana
transcript AT1G54220.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G54220.2 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: LOC_Os06g01630.5 (Oryza sativa), 5'ss of exon 18
GGAACATTTACTGTCTCTAACTTGGGAGGACCTTTTGGCATCAAGCAATTCTGTGCAGTCGTTAATCCACCTCAAGCCGCCATTCTAGCAGTTGGATCCGgta---tgctctctctcaat---gcagaagagagtttttttactactttaccaaagatccaataaccgattcgtgttgtgtc----tgattcttaaaaaaaaaaaaaacag-----------------
|| || || ||||| || ||||||||||| |||||||| || ||||||||||||||  |||| ||||| || ||| | || ||| | ||  |||| || ||||   ||||  ||  ||||   ||      ||  |  ||  |||   |  | ||    | ||   || ||   |   | |     ||||  |||   |  |     | |                  
GGCACTTTCACTGTGTCAAACTTGGGAGGCCCTTTTGGAATTAAGCAATTCTGTGCCATCGTAAATCCTCCACAATCAGCAATTTTGGCTATTGGCTCAGgtaacatgctgcctaacaatcacgccatcaggatctgcttatctatcatgtctaatggtctatgctcgcttgaagccattttgttatgatgtttacttaccacgtctagaaatttgttgtgtgcacag

upper sequence: AT1G54220.2 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 18
GGAACATTTACTGTCTCTAACTTGGGAGGACCTTTTGGCATCAAGCAATTCTGTGCAGTCGTTAATCCACCTCAAGCCGCCATTCTAGCAGTTGGATCCGgtatgctct---ctctcaatgcagaagagagtttttttactactttacca--aagatccaataaccgattcgtgttgtgtctgattcttaaaaaaaaaaaaaacag
|| ||||||||||| |||||  |||||||||| ||||| |||||||||||||||||  || | ||||| |||||  | | |||||||||  |||| || |||| | |     | || |||    | |    ||| |  | | | | | ||  |  ||||     |  |||  ||     |||| |  ||   |             
GGGACATTTACTGTGTCTAATCTGGGAGGACCCTTTGGTATCAAGCAATTCTGTGCCATCATCAATCCTCCTCAGTCAGGCATTCTAGCCATTGGGTCTGgtaagataaagacgcttaatattaatgcccttttgtacatt-catcatcatcatcatccccatcctcattgatg--aactctgttcttttgcag------------

upper sequence: AT1G54220.2 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: PP1S78_56V6.1 (Physcomitrella patens), 5'ss of exon 15
GGAACATTTACTGTCTCTAACTTGGGAGGACCTTTTGGCATCAAGCAATTCTGTGCAGTCGTTAATCCACCTCAAGCCGCCATTCTAGCAGTTGGATCCGgtatgctctctctcaatgcagaagagagtttttttactactttaccaaagatccaataaccgattcgtgttgtgtctgattcttaaaaaaaaaaaaaacag
|||||||||||  |||| || ||||||||||||||||| || || ||||| |||||  || | ||||| |||||||| |||||||| || |||||  |  ||| |   | | | ||| |       ||||||| |  |||| |    |   | ||  | |      |   ||    | |   | | |   ||  |      
GGAACATTTACAATCTCCAATTTGGGAGGACCTTTTGGGATTAAACAATTTTGTGCTATCATCAATCCTCCTCAAGCAGCCATTCTTGCTGTTGGGACTAgtaagtctttttttaatcccctgattagtttttgtgttactct-ttgagctttcaggatctttcaggacgtgcaggtaagagtcacattcaagcaggttta