1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GAGGAAAGGTATAATCGTTGGAAACGATCAAGAGGGTGACGATTCAGTAATCACTGCTAATgtaagaaccaatttagaaagcaaagtttcctctatcaacagtaattcacaacatgtaattatgtgtgtgtttaacag
species | Arabidopsis thaliana |
transcript | AT1G45332.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GGAAACGATCAAGAGGGTGACGATTCAGTAATCACTGCTAAT GTGCCTTTGAACAACATGTTTGGCTACTCCEST: gi|125121697|gb|EL168738.1|EL168738
genomic: GGAAACGATCAAGAGGGTGACGATTCAGTAATCACTGCTAATgtaagaacca ... tgtttaacagGTGCCTTTGAACAACATGTTTGGCTACTCC
EST: TAATCGTTGGAAACGATCAAGAGGGTGACGATTCAGTAATCACTGCTAAT GTGCCTTTGAACAACATEST: gi|125055324|gb|EL125604.1|EL125604
genomic: TAATCGTTGGAAACGATCAAGAGGGTGACGATTCAGTAATCACTGCTAATgtaagaacca ... tgtttaacagGTGCCTTTGAACAACAT
EST: TAATCGTTGGAAACGATCAAGAGGGTGATGATTCAGTAATCACTGCTAAT GTGCCTTTGAACAACATGTT
genomic: TAATCGTTGGAAACGATCAAGAGGGTGACGATTCAGTAATCACTGCTAATgtaagaacca ... tgtttaacagGTGCCTTTGAACAACATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGAAAGGTATAATCGTTGGAAACGATCAAGAGGGTGACGATTCAGTAATCACTGCTAATgtaagaaccaatttagaaagcaaagtttcctctatcaacagtaattcacaacatgtaattatgtgtgtgtttaacag
- - - - - - - - - - - - - - AAGAGG