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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCCAGAGAGTTCACTTCAAGATGTTGTTTCTCGGTACAGTTACATGGATCTTTGGCCATGCACTTCTAACGACCTTGATCATTTAGCCAGACAAGAGgtattttccatgcaacatatcgcaattagctcaaatagctactaatgatacatctagtaagtactaattctaaccgatcaatgtgttcactatag

Basic information

species Arabidopsis thaliana
transcript AT1G17760.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G17760.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: LOC_Os12g38380.1 (Oryza sativa), 5'ss of exon 18
TCCTCCAGAGAGTTCACTTCAAGATGTTGTTTCTCGGTACAGTTACATGGATCTTTGGCCATGCACTTCTAACGACCTTGATCATTTAGCCAGACAAGAGgtattttccatgcaacatatcgcaattagctcaaatagct-actaatgatacatctagtaagtac-taattctaaccgatcaatgtgttcactatag----
| |    || |   ||||| | || ||||||||||| ||||| || |||||||||||||||||| |  | || ||  | ||| || || | ||||| ||||| |   | ||   | ||||  ||| || ||   |||  | |        | || ||  |||  | || ||  |||  |       | ||| | |      
TGCCTTGGAAAACACACTTTATGACGTTGTTTCTCGATACAGCTATATGGATCTTTGGCCATGCTCAACCAAAGAATTGGATTATCTATCAAGACATGAGgtttgcactatctcaaatat-acaactaccttgcatatttcatccgaagcaaatgtaacaagctcatatttggaactcacagtcaagctcaattttaatgc

upper sequence: AT1G17760.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GRMZM2G107584_T01 (Zea mays), 5'ss of exon 1
TCCTCCAGAGAGTTCACTTCAAGATGTTGTTTCTCGGTACAGTTACATGGATCTTTGGCCATGCACTTCTAACGACCTTGATCATTTAGCCAGACAAGAGgtattttccatgcaacatatcgcaattagctcaaatagctactaatgatacatctagtaagtactaattctaaccgatcaatgtgttcactatag--------
  |  | || |   ||||||| ||  | |||||||| ||||||||||||||||||||||||||| | || || ||  | ||| || |||| ||||||||||| |   | || |||| |    || | ||||          |||   ||| ||  | |  ||   | |||| |       |||   | |   |          
-GCATCGGAAAACACACTTCATGACATAGTTTCTCGATACAGTTACATGGATCTTTGGCCATGCTCATCAAAAGAATTGGATTATCTAGCGAGACAAGAGgtgtgcactatccaacttcatacattaagcttctgcgat--ctatacatatatg-attgtgtttgagttcttatgcgatgatgaagttagcgtgctaaatgac

upper sequence: AT1G17760.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA19G14930.1 (Glycine max), 5'ss of exon 19
TCCTCCAGAGAGTTCACTTCAAGATGTTGTTTCTCGGTACAGTTACATGGATCTTTGGCCATGCACTTCTAACGACCTTGATCATTTAGCCAGACAAGAGgtattttccatgcaacatatcgcaattagctcaaatagctactaatgatacatctagt-aagtactaattctaaccga---tcaatgtgttcactatag------
  |   ||||||||| || |||||  |||| || |||||||||| ||||||||| ||||| ||| | ||||| || ||||||||||||||  | ||| ||||| |   ||   |   |||     |||  | | ||   ||| | |  | | | | || ||| || || |||| |  |   | ||  ||||      ||      
AGCATTAGAGAGTTCTCTGCAAGACATTGTATCACGGTACAGTTTCATGGATCTGTGGCCGTGCTCCTCTAATGATCTTGATCATTTAGCTCGGCAACAGgtactagtca---attgtatttttcttaa-tgagatgaatacca-tattgcttgtggtcaagaaccaactctaccaaaagcttaagatgttaggctgagattgat

upper sequence: AT1G17760.1 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: Vv11s0065g00710.t01 (Vitis vinifera), 5'ss of exon 18
TCCTCCAGAGAGTTCACTTCAAGATGTTGTTTCTCGGTACAGTTACATGGATCTTTGGCCATGCACTTCTAACGACCTTGATCATTTAGCCAGACAAGAGgtattttc-catgcaac-atatcgcaat-tagctcaaatagctactaatgatacatctagtaagtactaattctaaccgatcaatgtgttcactatag--
  |   ||| |||||| | ||||||||||| || ||||| ||||  |||||||||||||||||| | || |  ||  | ||||| || ||| |||||||||||  |||  ||      | || |   | |   ||| ||  ||   |  |  |    |  | | | |||    |     |   | || || |  ||    
AGCATTAGAAAGTTCATTGCAAGATGTTGTATCACGGTATAGTTTTATGGATCTTTGGCCATGCTCCTCAAGGGATTTGGATCACTTGGCCCGACAAGAGgtaccttcatatttgtttaaattgttttgttattcatatgcctgtcatggtgattatttttcatttctaggcatgcattactgaagtttttaacatctct