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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTACCCATATTCAGAATCTGCAGCAACTGCTCTTTGCGTCTTCAACTACGGCACAACCCATATTGACACCTTGGgtaaaataattctcagttaccaattttagtcgttaatctaaaccaatatatgaaagttttaactaaatgttgtttccttcatgtattattag

Basic information

species Arabidopsis thaliana
transcript AT5G48520.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48520.1 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA17G15510.1 (Glycine max), 5'ss of exon 16
GTGTACCCATATTCAGAATCTGCAGCAACTGCTCTTTGCGTCTTCAACTACGGCACAACCCATATTGACACCTTGGgtaaaataattctcag-ttaccaattttagtcgttaatctaa--accaatat-atgaaagttttaactaaatg-ttgtttccttcatgtattattag------
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GCGCAATCTTATTAAAAATCTGCAGAAACTGCTCTTTGCATCTTCAACAACAGCACAGCCAATACTGACCCCTCGGgta---tgattcccagatttgtaatgaggcttcatgattttgctgttagcattacaattgtttttccttttttcttctctgcttttagttatgtaaatttaat