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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGAGTAAGCGAAGGGCAATTCTATCAAGTTTTACTCTATGAGTTGGATGCAATTCGAAAGgtaaaaacttttgtgcatagcatgaaatgaatccgccacaaagttagcaaaacattttacataatcggaaacgggtttgtgtttgtttag

Basic information

species Arabidopsis thaliana
transcript AT5G43810.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 5'ss of exon 17
TGATGGAGTAAGCGAAGGGCAATTCTATCAAGTTTTACTCTATGAGTTGGATGCAATTCGAAAGgtaaaaacttttgtgcatagcatgaaatgaatccgccacaaagttagcaaaacattttacataatcggaaacgggtttgtgtttgtttag
 ||||| || || ||||| |||||||| |||||| | ||||||||||||||||| || || ||||| | |    || || ||    |  | |        || | | || |   |   | |||  |   | ||        ||| ||  |||||
GGATGGTGTCAGTGAAGGCCAATTCTACCAAGTTCTCCTCTATGAGTTGGATGCTATCCGCAAGgttagatgcatt-tgtattttctttact--------cagatattttgtccactttattaggttgcctgacgaaa---tgttttcttttag

upper sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA10G00530.1 (Glycine max), 5'ss of exon 9
TGATGGAGTAAGCGAAGGGCAATTCTATCAAGTTTTACTCTATGAGTTGGATGCAATTCGAAAGgtaaaaact--tttgtgcatagcatgaaatgaatccgccacaaagttagcaaaacattttacataatcggaaacgggtttgtgtttgtttag
 ||||| ||||| ||||||||||| || |||||| |||| |||||||||||||||||||| ||||| | || |  ||  |   |  ||| |||||            | ||   || || |    || ||  | | |    ||||           
GGATGGTGTAAGTGAAGGGCAATTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGgtcagaattgattactttcttccatcaaatgttctaataggtcattttataacacgtgcc-cacaa--gaatatatatttgcag--------

upper sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 18
TGATGGAGTAAGCGAAGGGCAATTCTATCAAGTTTTACTCTATGAGTTGGATGCAATTCGAAAGgtaaaaact-tttgtgcatagcatgaaatgaatccgccacaaagttagcaaaacattttacataatcggaaacgggtttgtgtttgtttag
 || || ||||| ||||||||||| || ||||||||||| |||||||||||||| ||||| ||||| |  |    ||   |  |  ||  | |   |     |  | || |   | |  || |    | |   |   | ||              
GGACGGTGTAAGTGAAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGATGCGATTCGGAAGgtcaggatcactttctctcattatacacttgttttcttattatgtcaaagatatgttctgagaagttatatctgtgtag------------

upper sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA02G00510.1 (Glycine max), 5'ss of exon 17
TGATGGAGTAAGCGAAGGGCAATTCTATCAAGTTTTACTCTATGAGTTGGATGCAATTCGAAAGgtaaaaacttttgtgcatag-catgaaatgaatccgccacaaagttagcaaaacattttacataatcggaaacgggtttgtgtttgtttag
 ||||| ||||| |||||||| || || |||||| |||| |||||||||||||||||||| ||||| | || |  | | | ||  |     || | | |   |  | || |       ||   ||||  ||  | | |  | | | | | |  ||
GGATGGTGTAAGTGAAGGGCAGTTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGgtcagaattgat-tacttattcccatcataagttc--tagtaggtcattt---tataacacatgttctcacaagaatatatttatttgcag

upper sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 17
lower sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 18
TGATGGAGTAAGCGAAGGGCAATTCTATCAAGTTTTACTCTATGAGTTGGATGCAATTCGAAAGgt-aaaaacttttgtgcatagcatgaaatgaatccgccacaaagttagcaa-aacattttacataatcggaaacgggtttgtgtttgtttag
 ||||| ||||| ||||| ||||| || ||||||||||| |||||||| ||||||||||| ||||| |  | |  ||   |  | |||  | |   |     |  | || |      | |  ||| ||    | |                     
GGATGGTGTAAGTGAAGGACAATTTTACCAAGTTTTACTTTATGAGTTAGATGCAATTCGGAAGgtcaggatcactttctctcatcatacacttgttttcttattatgtcaattctgagaagttatatctgtgtag--------------------