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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATTGCCAAACTAGAAGGTGTTGCTGTCAGTCAGTACTGTGCATTACGGCTATTGCAGgtaatttcggctgtcgcatgttgaatttatatctttcgagtcctttcttgtcaattttgttctttctgttcttaagaaagtttatttttatatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G28350.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G28350.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA09G39270.2 (Glycine max), 5'ss of exon 16
GTGATTGCCAAACTAGAAGGTGTTGCTGTCAGTCAGTACTGTGCATTACGGCTATTGCAGgtaatttcggctgtcgcatgttgaatttatatctttcgagtcctttcttgtcaatttt-gttctttctgttcttaagaaagtttatttttatatttgcag
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GTGATTGCCAAACTTGAAGGTCCTGCTGTCAGTCAGTACTGTGCATTACGATTACTACAGgt---ttgggct-tgattgcttcagtcctttttttttacatttgatttaattaactccagttagatcaataatgtggttatcaaacttacacag------

upper sequence: AT5G28350.2 (Arabidopsis thaliana), 5'ss of exon 16
lower sequence: GLYMA18G47050.1 (Glycine max), 5'ss of exon 16
GTGATTGCCAAACTAGAAGGTGTTGCTGTCAGTCAGTACTGTGCATTACGGCTATTGCAGgtaatttcggctgtcgcatgttgaatttatatctttcgagtcctttcttgtcaattttgttctttctgttcttaagaaagtttatttttatatttgcag--
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GTGATTGCCAAACTTGAAGGTCCTGCTGTCAGTCAGTACTGTGCTTTACGATTATTACAGgt---ttgggct--tgattgcttcagtcctttttttccatttgatttat-ttaactctagttacaccaacttcaatgatgtg-gttatcaaacttacacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125201706|gb|EL216660.1|EL216660
EST:     ACTAGAAGGTGTTGCTGTTCAGTCAGTACTGTGCATTACGGCTATTGCAG                         GCGACACTTGATGAGTCCCTCTATGATCTTG
genomic: ACTAGAAGGTGTTGCTG-TCAGTCAGTACTGTGCATTACGGCTATTGCAGgtaatttcgg ... atatttgcagGCGACACTTGATGAGTCCCTCTATGATCTTG
EST: gi|124862862|gb|EH947299.1|EH947299
EST:     AACTAGAAGGTGTTGCTGTCAGTCAGTACTGTGCATTACGGCTATTGCAG                         GCGACACTTGATGAGTCCCTCTATGATCTTG
genomic: AACTAGAAGGTGTTGCTGTCAGTCAGTACTGTGCATTACGGCTATTGCAGgtaatttcgg ... atatttgcagGCGACACTTGATGAGTCCCTCTATGATCTTG